Browse Element(s) Details


OsAffx.16418.1.S1_at

Description tigr:9635.m02516
TID=OsAffx.16418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Legume lectins alpha domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2617011/11Legume lectins alpha domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26150OsAffx.5446.1.S1_s_at11/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26150Os.11353.1.S1_at1/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein
LOC_Os07g26200OsAffx.13101.1.S1_at7/117+15061632..15062434hypothetical protein
LOC_Os07g26210Os.27796.1.A1_at8/117+15067969..15075744hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16418.1.S1_at--443--2091Chr07:15047197..15047221 (25 bp)
ACATCATCAGCACGCGCGCGGACGT
LOC_Os07g26170
OsAffx.16418.1.S1_at--91--5851Chr07:15047264..15047288 (25 bp)
GACCACTGGTTCTTGGATCGAGCGC
LOC_Os07g26170
OsAffx.16418.1.S1_at--288--9711Chr07:15047316..15047340 (25 bp)
TCAACAACAGTTGCTGTCGAGGATC
LOC_Os07g26170
OsAffx.16418.1.S1_at--1079--8711Chr07:15047330..15047354 (25 bp)
TGTCGAGGATCAGCCTCGCGAGCAG
LOC_Os07g26170
OsAffx.16418.1.S1_at--79--4611Chr07:15047347..15047371 (25 bp)
GCGAGCAGTCGACCTCTACTAGCTT
LOC_Os07g26170
OsAffx.16418.1.S1_at--1111--9891Chr07:15047363..15047756 (25 bp)
TACTAGCTTCTGTGCCTCTTACTTA
LOC_Os07g26170
OsAffx.16418.1.S1_at--55--7291Chr07:15047743..15047764 (22 bp)
GTGCCTCTTACTTACCATTGGTGAC
LOC_Os07g26170
OsAffx.16418.1.S1_at--104--1171Chr07:15048596..15048620 (25 bp)
AGTCACCTTCAACCTTACACTGGTT
LOC_Os07g26170
OsAffx.16418.1.S1_at--352--8171Chr07:15048658..15048682 (25 bp)
GGAACACACCAGTGATGGCGACTCT
LOC_Os07g26170
OsAffx.16418.1.S1_at--964--8871Chr07:15048670..15048694 (25 bp)
TGATGGCGACTCTGCAGCAGTGGCA
LOC_Os07g26170
OsAffx.16418.1.S1_at--674--7531Chr07:15048689..15048713 (25 bp)
GTGGCAGCGCAACAAAGAGATCTTC
LOC_Os07g26170
Target Sequence 
ACATCATCAGCACGCGCGCGGACGTGAAGAGGTTGCTGACGCAGGAGGTGGCCTTCGGCTTCTCCGCGACCACTGGTTCT
TGGATCGAGCGCCACCGCATCCTGTCCTGGTCCTTCAACTCAACAACAGTTGCTGTCGAGGATCAGCCTCGCGAGCAGTC
GACCTCTACTAGCTTCTGTGCCTCTTACTTACCATTGGTGACTGAAGTCACCTTCAACCTTACACTGGTTTGGGAAGGGA
ATAAGGATGGAGAAGCTAAGAAGGGGAGGAACACACCAGTGATGGCGACTCTGCAGCAGTGGCAGCGCAACAAAGAGATC
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis