Browse Element(s) Details


Os.38043.1.S1_x_at

Description gb:AK058767.1
DB_XREF= gi:32968785
TID=Os.38043.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D11, full insert sequence.
FL= gb:AK058767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g057803/11expressed protein
LOC_Os01g057442/11protein tyrosine phosphatase, putative, expressed
LOC_Os08g303401/11protein tyrosine phosphatase, putative, expressed
LOC_Os01g057601/11protein tyrosine phosphatase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38043.1.S1_x_at--835--5751Chr01:2748988..2749012 (25 bp)
GACGTTTTCTTCCATCTCGCATATT
NONE
Os.38043.1.S1_x_at--1024--451Chr01:2749001..2749025 (25 bp)
ATCTCGCATATTTCCTGCAATGGCA
NONE
Os.38043.1.S1_x_at--816--10531Chr01:2749597..2749616 (20 bp)
TTCAGGTGTCGTGGTTCATGGCTTC
LOC_Os01g05760
Os.38043.1.S1_x_at--565--6851Chr01:2757886..2758061 (25 bp)
GTTTGCCACAGTATATCCAGTCTTG
LOC_Os01g05780
Os.38043.1.S1_x_at--1028--9871Chr01:2758068..2758092 (25 bp)
TACTTGATCGCCCTGCGGAAGAAGG
LOC_Os01g05780
Os.38043.1.S1_x_at--829--3691Chr01:2744018..2744042 (25 bp)
CTATCTAATCTGGTTTCTGCTCGCA
LOC_Os01g05744
Os.38043.1.S1_x_at--561--1011Chr01:2758164..2758188 (25 bp)
AGGTTGCTACCGTTTCTTCAGCAAA
LOC_Os01g05780
Os.38043.1.S1_x_at--311--3091Chr01:2758221..2758245 (25 bp)
AATACATGGACTATCTTTTCCCTTG
NONE
Os.38043.1.S1_x_at--437--8752Chr08:18545537..18545561 (25 bp)
TGTACACGAGTACCATTTTCATGAT
LOC_Os08g30340
Os.38043.1.S1_x_at--611--6972Chr01:2758302..2758326 (25 bp)
GTACCAAACTTTGGCTTTTCCATAT
NONE
Os.38043.1.S1_x_at--63--9831Chr01:2758332..2758356 (25 bp)
TAAAATTGCACTCCGTATCGATGCC
NONE
Target Sequence 
GACGTTTTCTTCCATCTCGCATATTTCCTGCAATGGCAGGGAATGCGTCAGGGGTGCGGAGGCTCTACCTCTCTCTCTAC
AACTGGATTGTCTTCATCGGATGGGTTCAGGTGTCGTGGTTCATGGCTTCGTTTGCCACAGTATATCCAGTCTTGTTTCG
CTACTTGATCGCCCTGCGGAAGAAGGCCTTGGCAAAAGCAAAACCACATAACTACTGAAGAGCTATCTAATCTGGTTTCT
GCTCGCAGCTACAGCTCAGGTTGCTACCGTTTCTTCAGCAAATAAGTAAAAGTGTATTAGAATGGAAATGCCGAAATACA
TGGACTATCTTTTCCCTTGGTAAATAAAAATGTACACGAGTACCATTTTCATGATTTGCTAATTAATGGTGTGTTGTACC
AAACTTTGGCTTTTCCATATGTAAATAAAATTGCACTCCGTATCGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38043.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis