Browse Element(s) Details


Os.45364.1.S1_at

Description gb:AK120777.1
DB_XREF= gi:37990400
TID=Os.45364.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.13 (P0009G03.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009J05, full insert sequence.
FL= gb:AK120777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0579011/11SLT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45364.1.S1_at--1000--5771Chr01:2764840..2764864 (25 bp)
GACGAGACTGGCACTGGACTGGAAA
LOC_Os01g05790
Os.45364.1.S1_at--445--8151Chr01:2764860..2764884 (25 bp)
GGAAATCATGGTCCCCAAGCACCGA
LOC_Os01g05790
Os.45364.1.S1_at--483--3231Chr01:2764875..2764899 (25 bp)
CAAGCACCGAGTTGGACCCGAAGAG
LOC_Os01g05790
Os.45364.1.S1_at--593--5331Chr01:2764903..2764927 (25 bp)
GAAGTCCAGGTTTGCATGAGGCCCC
LOC_Os01g05790
Os.45364.1.S1_at--341--10051Chr01:2764984..2765008 (25 bp)
TAGATCTTCCTGTGTCATGCCATGA
LOC_Os01g05790
Os.45364.1.S1_at--715--5491Chr01:2765064..2765088 (25 bp)
GAAATTCCTTTCTCAGTAGTGTTGG
LOC_Os01g05790
Os.45364.1.S1_at--239--10771Chr01:2765117..2765141 (25 bp)
TTGATTCTCCCCTGTACTTTTTACA
LOC_Os01g05790
Os.45364.1.S1_at--413--7011Chr01:2765130..2765154 (25 bp)
GTACTTTTTACACTAGCACCACTAT
LOC_Os01g05790
Os.45364.1.S1_at--658--6671Chr01:2765273..2765297 (25 bp)
GTTCGGAACTGTGTTGTCAATTTCA
LOC_Os01g05790
Os.45364.1.S1_at--52--5211Chr01:2765298..2765322 (25 bp)
GCAATTGTTTGTAATCGCTGTCTTA
LOC_Os01g05790
Os.45364.1.S1_at--918--3271Chr01:2765379..2765403 (25 bp)
CAAAAACTCGATCCCATTGCTGTAC
LOC_Os01g05790
Target Sequence 
GACGAGACTGGCACTGGACTGGAAATCATGGTCCCCAAGCACCGAGTTGGACCCGAAGAGCATGAAGTCCAGGTTTGCAT
GAGGCCCCCACACCTTGGTGAAAACGATCTTCTTTTATCATAGAACAGAAAACAGTTTAGTCTTTAGATCTTCCTGTGTC
ATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATGGATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAG
TAGTGTTGGTGATTTAGGCAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATTGG
AGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGATCANGTTCAACGGTTCATTACTC
CATAATAATGTCGACAGCTACTTACGNCTAGAAGTTCGGAACTGTGTTGTCAATTTCAGCAATTGTTTGTAATCGCTGTC
TTAATCATTTCAATGTGCTGTACTACAATACTACTGGCTGGATCAGCTTTCAACTGAAACCAAAAACTCGATCCCATTGC
TGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis