Browse Element(s) Details


OsAffx.28023.2.S1_at

Description tigr:9634.m03878
TID=OsAffx.28023.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4042011/11hypothetical protein
LOC_Os01g057702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40380Os.45976.1.S1_at5/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40380Os.45976.1.S1_x_at2/116+24050222..24052115transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40390NANA6+24054533..24055578hypothetical protein
LOC_Os06g40400NANA6+24055973..24056977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40420OsAffx.28023.2.S1_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.2.S1_s_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.1.S1_at2/116+24075180..24076128hypothetical protein
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28023.2.S1_at--743--4471Chr06:24075761..24075785 (25 bp)
GCCGGCGAAGCGGTCTGGTGGTCCG
LOC_Os06g40420
OsAffx.28023.2.S1_at--26--8431Chr06:24075365..24075385 (21 bp)
GGCCGGCAACAACGATGCCTGCGAC
LOC_Os06g40420
OsAffx.28023.2.S1_at--978--8231Chr06:24075260..24075381 (25 bp)
GGCAACAACGATGCCTGCGACAGCG
LOC_Os06g40420
OsAffx.28023.2.S1_at--205--2471Chr06:24075257..24075378 (25 bp)
AACAACGATGCCTGCGACAGCGGCA
LOC_Os06g40420
OsAffx.28023.2.S1_at--162--6331Chr06:24075251..24075372 (25 bp)
GATGCCTGCGACAGCGGCACCTTTG
LOC_Os06g40420
OsAffx.28023.2.S1_at--411--3832Chr06:24075246..24075268 (23 bp)
CTGCGACAGCGGCACCTTTGGTGTC
LOC_Os06g40420
OsAffx.28023.2.S1_at--192--5651Chr06:24075242..24075266 (25 bp)
GACAGCGGCACCTTTGGTGTCGTAC
LOC_Os06g40420
OsAffx.28023.2.S1_at--722--4691Chr06:24075238..24075262 (25 bp)
GCGGCACCTTTGGTGTCGTACCCTT
LOC_Os06g40420
OsAffx.28023.2.S1_at--1074--4291Chr06:24075217..24075241 (25 bp)
CCTTTTCGAAGGTGTCGTCTCGAAG
LOC_Os06g40420
OsAffx.28023.2.S1_at--398--10613Chr01:2751947..2751968 (22 bp)
TTCGAAGGTGTCGTCTCGAAGACCT
LOC_Os01g05770
OsAffx.28023.2.S1_at--577--4033Chr01:2751947..2751970 (24 bp)
CGAAGGTGTCGTCTCGAAGACCTTC
LOC_Os01g05770
Target Sequence 
GCCGGCGAAGCGGTCTGGTGGTCCGAGGTGACACGGACAACGGATTCGTGGCGGAGCCAGCGGTTACTCTGTCAGGGGGA
GCCACGGTCCTCTCGACGTTCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGT
CGGGCAGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAG
CCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGCGTGGCGCCGGTGCGGTGGCCGTGCGTCGAAGG
TTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTTCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCG
GGCCGGCAACAACGATGCCTGCGACAGCGGCACCTTTGGTGTCGTACCCTTTTCGAAGGTGTCGTCTCGAAGACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28023.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis