Browse Element(s) Details


Os.49516.1.S1_at

Description gb:AK106565.1
DB_XREF= gi:32991774
TID=Os.49516.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D09, full insert sequence.
FL= gb:AK106565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4045011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40420OsAffx.28023.2.S1_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.2.S1_s_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.1.S1_at2/116+24075180..24076128hypothetical protein
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein
LOC_Os06g40470NANA6+24109519..24112810retrotransposon protein, putative, unclassified
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49516.1.S1_at--191--3911Chr06:24093718..24093742 (25 bp)
CTGGAGGACTCAAAGTATGCTGTTT
LOC_Os06g40450
Os.49516.1.S1_at--1127--3071Chr06:24093642..24093666 (25 bp)
AATAACTTGTTTGGTGATGGTCTAC
LOC_Os06g40450
Os.49516.1.S1_at--853--1551Chr06:24093606..24093630 (25 bp)
AGCTATTCTGCTTTAACCCATTGAT
LOC_Os06g40450
Os.49516.1.S1_at--1157--7551Chr06:24093534..24093558 (25 bp)
GGGCCTTATGATTGTTGCATTTCTG
LOC_Os06g40450
Os.49516.1.S1_at--31--10411Chr06:24093453..24093477 (25 bp)
TTTTGCAACCATAAGCTTTTCCATC
LOC_Os06g40450
Os.49516.1.S1_at--1071--1551Chr06:24093440..24093464 (25 bp)
AGCTTTTCCATCTTGTGAGACCTCA
LOC_Os06g40450
Os.49516.1.S1_at--54--5991Chr06:24093424..24093448 (25 bp)
GAGACCTCAGTCAGTTTAAGCTTGT
LOC_Os06g40450
Os.49516.1.S1_at--816--5231Chr06:24093397..24093421 (25 bp)
GAATACTCTTTGCTTATAGGCTTAT
LOC_Os06g40450
Os.49516.1.S1_at--292--10831Chr06:24093367..24093391 (25 bp)
TTGTGAACCATTCTACCAACTACCA
LOC_Os06g40450
Os.49516.1.S1_at--1079--4811Chr06:24093336..24093360 (25 bp)
GCTCATATTGATAGTGTTTCTTGCA
LOC_Os06g40450
Os.49516.1.S1_at--761--6831Chr06:24093321..24093345 (25 bp)
GTTTCTTGCATTGACACATTCCTCA
LOC_Os06g40450
Target Sequence 
CTGGAGGACTCAAAGTATGCTGTTTGTTTGTTGACAGTATTTTTGTGGCTTAGCTGTTTCTGTTTTCTCAAGAAAAAATA
ACTTGTTTGGTGATGGTCTACATATCCAATTAAGCTATTCTGCTTTAACCCATTGATTAAGAAAAAGCAGGGCTTTTTTT
TTGAGTGAAAGCGACTAAGCAAGGGGGCCTTATGATTGTTGCATTTCTGATGTTCTGCCCCCTCAAATTATGCCAAAAGA
ATTTTCTTGCTTACTATTCTCTTATTTTTGCAACCATAAGCTTTTCCATCTTGTGAGACCTCAGTCAGTTTAAGCTTGTT
TGAATACTCTTTGCTTATAGGCTTATTTTTTTTGTGAACCATTCTACCAACTACCAATTGAAGCTCATATTGATAGTGTT
TCTTGCATTGACACATTCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis