Browse Element(s) Details


Os.52578.1.S1_x_at

Description gb:AK068134.1
DB_XREF= gi:32978152
TID=Os.52578.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013133M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133M15, full insert sequence.
FL= gb:AK068134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4046011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein
LOC_Os06g40470NANA6+24109519..24112810retrotransposon protein, putative, unclassified
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52578.1.S1_x_at--876--2131Chr06:24104682..24104706 (25 bp)
ACAGATTCTCCTGTATGCTGGCCAG
LOC_Os06g40460
Os.52578.1.S1_x_at--442--4711Chr06:24104698..24104722 (25 bp)
GCTGGCCAGGATCTGTTGTCCGAAA
LOC_Os06g40460
Os.52578.1.S1_x_at--598--10671Chr06:24104777..24104801 (25 bp)
TTCCTCTCGCACAACTTATATTGGC
LOC_Os06g40460
Os.52578.1.S1_x_at--992--11Chr06:24104796..24104820 (25 bp)
ATTGGCTCAGTTTTCCCAAGATCTA
LOC_Os06g40460
Os.52578.1.S1_x_at--117--7951Chr06:24104983..24105007 (25 bp)
GGATCCCGTGATGCCTATAATAACT
LOC_Os06g40460
Os.52578.1.S1_x_at--190--2371Chr06:24105015..24105039 (25 bp)
AAAGCCACAATTTTCATCTCCTTTC
LOC_Os06g40460
Os.52578.1.S1_x_at--675--7551Chr06:24105762..24105786 (25 bp)
GGGCGCAACCGTCAACAACATATTC
LOC_Os06g40460
Os.52578.1.S1_x_at--1107--8811Chr06:24105808..24105832 (25 bp)
TGTTGGTGCAACTACTCCCTTATTT
LOC_Os06g40460
Os.52578.1.S1_x_at--1004--2731Chr06:24105857..24105881 (25 bp)
AAGAATGATGGATCCGCCCTTCAAG
LOC_Os06g40460
Os.52578.1.S1_x_at--772--10531Chr06:24105913..24105937 (25 bp)
TTCATCGCTCGGGTTTGTTTCAATG
LOC_Os06g40460
Os.52578.1.S1_x_at--303--2271Chr06:24105959..24105983 (25 bp)
AAATCTGCGGCTTTATCTGTTCATC
LOC_Os06g40460
Target Sequence 
ACAGATTCTCCTGTATGCTGGCCAGGATCTGTTGTCCGAAACTATCCGAATTATCTTACACCACAGAGCAATAAAGGAAG
AACTCTGCCTNCAACTTCCTCTCGCACAACTTATATTGGCTCAGTTTTCCCAAGATCTAACAAGTACACAGGATCCCGTG
ATGCCTATAATAACTCATCTGGAAAGCCACAATTTTCATCTCCTTTCCCTGTTGGAAGTAAGGCAATATTTGAGGATAAA
ACAGCACCTCTTGGTGCTGTTCTTGGGGCGCAACCGTCAACAACATATTCCAAAGAAGCATATGGAGATACTGTTGGTGC
AACTACTCCCTTATTTGCAAAGAAATGTTCTGCTTCTAAGAAGAATGATGGATCCGCCCTTCAAGGACATCATGGCGAAG
GCACCACTGAAAGTGGTTCATCGCTCGGGTTTGTTTCAATGGTAGACAATATGCCCCATTCCAAATCTGCGGCTTTATCT
GTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52578.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis