Browse Element(s) Details


Os.50415.1.S1_at

Description gb:AK121115.1
DB_XREF= gi:37990738
TID=Os.50415.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073M23, full insert sequence.
FL= gb:AK121115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4049011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein
LOC_Os06g40470NANA6+24109519..24112810retrotransposon protein, putative, unclassified
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g40500Os.53183.1.S1_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40500Os.6102.1.S1_s_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40510OsAffx.15861.1.S1_at9/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40510Os.38109.1.S1_at2/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40520Os.39427.1.A1_s_at11/116+24149158..24153305expressed protein
LOC_Os06g40520Os.39427.1.A1_at11/116+24149158..24153305expressed protein
LOC_Os06g40520OsAffx.28025.4.S1_x_at1/116+24149158..24153305expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50415.1.S1_at--1117--5811Chr06:24127753..24127777 (25 bp)
GACCCGAATACTAGTCTGCATTATG
LOC_Os06g40490
Os.50415.1.S1_at--512--6471Chr06:24127777..24127801 (25 bp)
GATAACATGTTCGATGCTCAGATAG
LOC_Os06g40490
Os.50415.1.S1_at--1027--611Chr06:24127811..24127835 (25 bp)
ATGCTGCTCTGCAGGCCGCTGGGTA
LOC_Os06g40490
Os.50415.1.S1_at--578--91Chr06:24128027..24128051 (25 bp)
ATTCGAAGCCTGGACCTAGCTCGGA
LOC_Os06g40490
Os.50415.1.S1_at--1100--6131Chr06:24128107..24128131 (25 bp)
GAGGGTCTATTACCTTCATCTGCAC
LOC_Os06g40490
Os.50415.1.S1_at--847--3671Chr06:24128133..24128154 (22 bp)
CTCGTACTTCTTGTCTCTTAGGAAA
LOC_Os06g40490
Os.50415.1.S1_at--1035--7911Chr06:24129190..24129214 (25 bp)
GGTTGGATTGTACACTATTCGGCTA
LOC_Os06g40490
Os.50415.1.S1_at--398--3671Chr06:24129204..24129228 (25 bp)
CTATTCGGCTACAGTTATTTTATCT
LOC_Os06g40490
Os.50415.1.S1_at--4--491Chr06:24129225..24129249 (25 bp)
ATCTGTTTTCATTTTCTTAGCCTTA
LOC_Os06g40490
Os.50415.1.S1_at--274--3651Chr06:24129240..24129264 (25 bp)
CTTAGCCTTAGTGACTTGATTACAG
LOC_Os06g40490
Os.50415.1.S1_at--702--671Chr06:24129340..24129364 (25 bp)
ATGAAATAATAGCTCCCTTCGCACC
LOC_Os06g40490
Target Sequence 
GACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGG
GTATANANACATGGAGGTCCNAGNNNCGGAGACTGGCTGGGCTTCTANNGGAGATCNNACTGANGCAGGANCTTCNGTTG
AGAATGCAAGGACTTACAATTTCNNCCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCNAGCCAAAGAGACCA
GTCAAAGCATACNTCTTTGCGTNGTTTAATGANAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAA
TGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTA
GGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTG
ACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACA
ATGAAAGATGAAATAATAGCTCCCTTCGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis