Browse Element(s) Details


Os.39427.1.A1_at

Description gb:CF307398
DB_XREF= gi:33679159
DB_XREF=HDA1--06-J12.g1
CLONE=HDA1--06-J12
TID=Os.39427.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3745011/11hypothetical protein
LOC_Os09g0691011/11retrotransposon protein, putative, unclassified
LOC_Os11g4172011/11hypothetical protein
LOC_Os06g4052011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37411Os.54064.1.S1_at11/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_at5/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.2.A1_at4/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_x_at3/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.5.S1_x_at2/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.2.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.53479.1.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37430OsAffx.28025.2.S1_at10/113+20709434..20714568hypothetical protein
LOC_Os03g37440NANA3+20715418..20716337hypothetical protein
LOC_Os03g37444OsAffx.17914.1.S1_x_at1/113+20717745..20718205NA
LOC_Os03g37450Os.39427.1.A1_at11/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_x_at7/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_at4/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.39427.1.A1_s_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.46592.1.S1_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein
LOC_Os03g37470OsAffx.25398.1.S1_x_at11/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37470Os.55033.1.A1_at10/113+20727305..20737288MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39427.1.A1_at--1041--2994Chr03:20721633..20721657 (25 bp)
AATGAATATTATGGTGTGGCTGTTC
LOC_Os03g37450
Os.39427.1.A1_at--1021--654Chr03:20721634..20721658 (25 bp)
ATGAATATTATGGTGTGGCTGTTCA
LOC_Os03g37450
Os.39427.1.A1_at--376--5234Chr03:20721636..20721660 (25 bp)
GAATATTATGGTGTGGCTGTTCATA
LOC_Os03g37450
Os.39427.1.A1_at--836--3114Chr03:20721637..20721661 (25 bp)
AATATTATGGTGTGGCTGTTCATAG
LOC_Os03g37450
Os.39427.1.A1_at--630--234Chr03:20721638..20721662 (25 bp)
ATATTATGGTGTGGCTGTTCATAGT
LOC_Os03g37450
Os.39427.1.A1_at--965--154Chr03:20721640..20721664 (25 bp)
ATTATGGTGTGGCTGTTCATAGTGT
LOC_Os03g37450
Os.39427.1.A1_at--11--10454Chr03:20721641..20721665 (25 bp)
TTATGGTGTGGCTGTTCATAGTGTT
LOC_Os03g37450
Os.39427.1.A1_at--817--10114Chr03:20721642..20721666 (25 bp)
TATGGTGTGGCTGTTCATAGTGTTA
LOC_Os03g37450
Os.39427.1.A1_at--690--814Chr03:20721643..20721667 (25 bp)
ATGGTGTGGCTGTTCATAGTGTTAC
LOC_Os03g37450
Os.39427.1.A1_at--28--8634Chr03:20721644..20721668 (25 bp)
TGGTGTGGCTGTTCATAGTGTTACA
LOC_Os03g37450
Os.39427.1.A1_at--1096--7734Chr03:20721645..20721669 (25 bp)
GGTGTGGCTGTTCATAGTGTTACAA
LOC_Os03g37450
Target Sequence 
AATGAATATTATGGTGTGGCTGTTCATAGTGTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39427.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis