Browse Element(s) Details


OsAffx.25398.1.S1_x_at

Description tigr:9631.m03592
TID=OsAffx.25398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative MatE domain containing protein, 3-partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3747011/11MATE efflux family protein, expressed
LOC_Os03g376401/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37430OsAffx.28025.2.S1_at10/113+20709434..20714568hypothetical protein
LOC_Os03g37440NANA3+20715418..20716337hypothetical protein
LOC_Os03g37444OsAffx.17914.1.S1_x_at1/113+20717745..20718205NA
LOC_Os03g37450Os.39427.1.A1_at11/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_x_at7/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_at4/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.39427.1.A1_s_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.46592.1.S1_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein
LOC_Os03g37470OsAffx.25398.1.S1_x_at11/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37470Os.55033.1.A1_at10/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37490Os.6998.1.S1_at11/113+20747776..20754379MATE efflux family protein, expressed
LOC_Os03g37500NANA3+20759571..20766975retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25398.1.S1_x_at--780--6331Chr03:20733210..20733234 (25 bp)
GATGCTTTGCCTCGAGACGTGGTAC
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--604--5711Chr03:20733004..20733155 (25 bp)
GACTCTCTTGCAGTGTGCATGTCAA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--537--8791Chr03:20732967..20732991 (25 bp)
TGTTCATGGTGTCGGTTGGCTTCAA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--322--10871Chr03:20732955..20732976 (22 bp)
TTGGCTTCAATGCAGCAGCTAGCGT
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--858--2992Chr03:20825177..20825201 (25 bp)
AATGAGCTTGGTGCGGGCAACCCGA
LOC_Os03g37640
OsAffx.25398.1.S1_x_at--216--1611Chr03:20732067..20732091 (25 bp)
AGCGTTCTCCGTGAAGGTGGTGACA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--780--7231Chr03:20732037..20732061 (25 bp)
GTCGCTGATCGTGGCGGCAATCATA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--626--291Chr03:20732015..20732039 (25 bp)
ATAGCAGCGATTGTCATGTGCCTCC
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--878--1171Chr03:20731987..20732011 (25 bp)
AGTACCTTAGTTACGTGTTCACGCA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--841--3251Chr03:20728587..20728611 (25 bp)
CAACGACGACTTGCGGTGGTGGCAA
LOC_Os03g37470
OsAffx.25398.1.S1_x_at--239--4191Chr03:20728545..20728569 (25 bp)
CCCTACTCCCGCAAGATGACGAGGA
LOC_Os03g37470
Target Sequence 
GATGCTTTGCCTCGAGACGTGGTACTTCCAGGTCACGGTCCTCATCGCCGGCTTGCTCAAGGATCCGGAGATCGCCCTCG
ACTCTCTTGCAGTGTGCATGTCAATATCAGGATGGGTGTTCATGGTGTCGGTTGGCTTCAATGCAGCAGCTAGCGTTAGA
GTGAGCAATGAGCTTGGTGCGGGCAACCCGAGGGCAGCAGCGTTCTCCGTGAAGGTGGTGACAAGCCTGTCGCTGATCGT
GGCGGCAATCATAGCAGCGATTGTCATGTGCCTCCGTGAGTACCTTAGTTACGTGTTCACGCAGGGCGAAGAGGTCGCCC
GTGCTGTTTCCAGCATGACCCCATTGCTCGCTGTTACCATCGTCCTCAATGGAATTCAGCCAGTCCTGTCAGGCTCCCCC
TCCCATGCGGCGACAGCAACGACGACTTGCGGTGGTGGCAAGCGGTGGACCCAGCCACCCCTACTCCCGCAAGATGACGA
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25398.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis