Browse Element(s) Details


Os.39427.1.A1_s_at

Description gb:CF307398
DB_XREF= gi:33679159
DB_XREF=HDA1--06-J12.g1
CLONE=HDA1--06-J12
TID=Os.39427.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0691011/11retrotransposon protein, putative, unclassified
LOC_Os06g4052011/11expressed protein
LOC_Os11g417202/11hypothetical protein
LOC_Os03g374501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06880NANA9+3296737..3300226retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06890OsAffx.29738.2.S1_at11/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.54718.1.S1_at4/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.57571.1.S2_at1/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06900NANA9+3317012..3320815transposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_s_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.11140.1.S1_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.28025.4.S1_x_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06920OsAffx.11140.1.S1_at2/119+3334140..3340666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g06930OsAffx.6190.1.S1_at11/119+3342946..3343222hypothetical protein
LOC_Os09g06940NANA9+3347092..3347772hypothetical protein
LOC_Os09g06950Os.55510.1.S1_at10/119+3354810..3355603expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39427.1.A1_s_at--12--5734Chr03:20721685..20721709 (25 bp)
GACTGCCAAGACCATCTGAAAACTG
LOC_Os03g37450
Os.39427.1.A1_s_at--8--8473Chr11:24549963..24550083 (25 bp)
TGGCCTCGTCCCTATGTAAGAAAGC
LOC_Os11g41720
Os.39427.1.A1_s_at--253--1234Chr03:20721879..20721903 (25 bp)
AGTTCTGCCCAGTAGCAAGGCCCTT
NONE
Os.39427.1.A1_s_at--32--2954Chr03:20721895..20721919 (25 bp)
AAGGCCCTTTCATACGAGTGCTCTG
NONE
Os.39427.1.A1_s_at--247--6113Chr11:24549896..24549920 (25 bp)
GAGTGCTCTGCTCATAACCAGAATT
NONE
Os.39427.1.A1_s_at--441--10713Chr11:24549871..24549895 (25 bp)
TTGCTGTTATTATTGGTCTGACTAT
NONE
Os.39427.1.A1_s_at--874--5414Chr03:20721997..20722021 (25 bp)
GAAGCCCTGATATTCAACTTTCCTT
NONE
Os.39427.1.A1_s_at--359--293Chr03:20722035..20722059 (25 bp)
ATAGATTTCCTTCTAGCAGTTTAGA
NONE
Os.39427.1.A1_s_at--1126--7133Chr11:24549705..24549729 (25 bp)
GTCTATTGCACTTTAGTTTTCCAGT
NONE
Os.39427.1.A1_s_at--289--6813Chr11:24549690..24549714 (25 bp)
GTTTTCCAGTTAGTCGTATATGTCT
NONE
Os.39427.1.A1_s_at--616--10454Chr03:20722168..20722192 (25 bp)
TTAGTTGTAAACTCCTTGCTCTCAT
NONE
Target Sequence 
GACTGCCAAGACCATCTGAAAACTGTACTACATTAAGAGAGGCAATTGGTTATGTCATTCCTTGGCCTCGTCCCTATGTA
AGAAAGCGTAGGGATACAAGTTCTGCCCAGTAGCAAGGCCCTTTCATACGAGTGCTCTGCTCATAACCAGAATTTTGCTG
TTATTATTGGTCTGACTATAGGATAATGAATGGAGGACTGAAGAAAAGAAAGAGTGGAAGCCCTGATATTCAACTTTCCT
TTTGAAGAAATATTATAGATTTCCTTCTAGCAGTTTAGAAAAACACGCACAACAAGCTGTAGGATGTTATATATGTGTGT
GTCTATTGCACTTTAGTTTTCCAGTTAGTCGTATATGTCTATTTAAAATTACATGGATGTTTTATTTAGTTGTAAACTCC
TTGCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39427.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis