Browse Element(s) Details


Os.54718.1.S1_at

Description gb:AK106585.1
DB_XREF= gi:32991794
TID=Os.54718.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E11, full insert sequence.
FL= gb:AK106585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g068904/11BTB/POZ domain containing protein
LOC_Os01g118702/11hypothetical protein
LOC_Os02g209202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06850Os.53142.1.S1_at3/119+3283992..3284746transposon protein, putative, unclassified
LOC_Os09g06860NANA9+3286518..3287111transposon protein, putative, unclassified
LOC_Os09g06870Os.24831.1.S1_x_at9/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.3.S1_x_at9/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.3.S1_s_at5/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.53142.1.S1_at3/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.4.S1_x_at1/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06880NANA9+3296737..3300226retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06890OsAffx.29738.2.S1_at11/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.54718.1.S1_at4/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.57571.1.S2_at1/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06900NANA9+3317012..3320815transposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_s_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.11140.1.S1_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.28025.4.S1_x_at1/119+3324212..3331210retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54718.1.S1_at--360--631Chr03:27320946..27320970 (25 bp)
ATGCTCCCAATTAGCAGTTGTTGGT
NONE
Os.54718.1.S1_at--842--1311NONE
AGAGGATGTGCTATATCCCCAACCT
NONE
Os.54718.1.S1_at--250--5811Chr03:27320788..27320812 (25 bp)
GACGCGACCAAAACGCATTCCATGA
NONE
Os.54718.1.S1_at--861--10151Chr03:27320716..27320740 (25 bp)
TATCGAGCACTACTACAGCATACAT
NONE
Os.54718.1.S1_at--835--493Chr01:6423116..6423140 (25 bp)
ATCGGCATTGATCTGGGATTATCCT
LOC_Os01g11870
Os.54718.1.S1_at--576--6552Chr09:3305137..3305365 (25 bp)
GATTATCCTGCCATTGCTCGCAAGT
LOC_Os09g06890
Os.54718.1.S1_at--1010--5171Chr03:27320641..27320665 (25 bp)
GCAAGTTGCTAATAGGTAGTCCTTT
NONE
Os.54718.1.S1_at--700--9752Chr09:3305211..3305235 (25 bp)
TAATATATACCTGGTGGCACCTCTG
LOC_Os09g06890
Os.54718.1.S1_at--1158--3071Chr03:27320430..27320454 (25 bp)
AATCACGATTGTAAGCTTGGAGGAC
NONE
Os.54718.1.S1_at--993--8014Chr09:3305386..3305409 (24 bp)
GGAGGACACCATTACTTAAGCATAT
LOC_Os09g06890
Os.54718.1.S1_at--1--3672Chr09:3305399..3305423 (25 bp)
CTTAAGCATATTTCCCTGTCAGAAT
LOC_Os09g06890
Target Sequence 
ATGCTCCCAATTAGCAGTTGTTGGTGAATTGATAGAATTTTGGTAATTTTTGGTGAAATATATTTTCCAAAGAGATAAAC
CTTATTTTAGATAAAGAAGATATTTTATTTTGAAGCAGAGGATGTGCTATATCCCCAACCTCTGCCCCAGGGGCATGCGA
CGCGACCAAAACGCATTCCATGATGCTCTATAAGTCTAGAACTACTACAACATATATAATTTCATTTTTATATCGAGCAC
TACTACAGCATACATAATTTTCATTTTTATATCGGCATTGATCTGGGATTATCCTGCCATTGCTCGCAAGTTGCTAATAG
GTAGTCCTTTTATTTTCTTCTTTGCAAGAGGAGACAACCTTAATATATACCTGGTGGCACCTCTGACCACAGGTTTGGAG
GATGGAATTAGGCACAATGTGATGCATATGACTTCAGTGGAGCAATTTTATCAGGATTGCAGGTTTGGTGGATGGCATTA
GGCAAGGTGATGGGCATGACTTAAGTGGAGCAAGTTAATCACGATTGTAAGCTTGGAGGACACCATTACTTAAGCATATT
TCCCTGTCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis