Browse Element(s) Details


Os.57571.1.S2_at

Description gb:AK062485.1
DB_XREF= gi:32972503
TID=Os.57571.1
CNT=5
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.57571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G09, full insert sequence.
FL= gb:AK062485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g127504/11hypothetical protein
LOC_Os01g118701/11hypothetical protein
LOC_Os02g209201/11hypothetical protein
LOC_Os09g068901/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA
LOC_Os03g12750OsAffx.25074.1.S1_at9/113+6795264..6798259hypothetical protein
LOC_Os03g12750Os.57571.1.S2_at4/113+6795264..6798259hypothetical protein
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57571.1.S2_at--525--5012Chr03:9941267..9941291 (25 bp)
GCAGGATTATTTCTTTGCTTTAAGT
NONE
Os.57571.1.S2_at--461--2033Chr03:9941306..9941330 (25 bp)
ACTATGGTTATTGGTCACTGGTCAG
NONE
Os.57571.1.S2_at--1130--7092Chr03:9941319..9941343 (25 bp)
GTCACTGGTCAGATAAGGGTACATA
NONE
Os.57571.1.S2_at--606--7593Chr03:9941399..9941423 (25 bp)
GGGCATGGAACAACTCTGATTCTGA
NONE
Os.57571.1.S2_at--830--2451Chr03:9941481..9941505 (25 bp)
AACAAGCCTTATATGCTCCTAGCTA
NONE
Os.57571.1.S2_at--1044--252Chr03:9941491..9941515 (25 bp)
ATATGCTCCTAGCTAGCAGCTGCTG
NONE
Os.57571.1.S2_at--510--10011Chr03:9941504..9941528 (25 bp)
TAGCAGCTGCTGGTGAATTGATAAA
NONE
Os.57571.1.S2_at--1077--8612Chr03:9941533..9941557 (25 bp)
TGGTGATTTTGTCCTAACGCTTCAA
NONE
Os.57571.1.S2_at--692--6911Chr03:9941650..9941674 (25 bp)
GTATGTGCTATAGACCCAACCTCTA
NONE
Os.57571.1.S2_at--190--5135Chr09:3305010..3305032 (23 bp)
GCACACGACCAAAACACATTCCATG
LOC_Os09g06890
Os.57571.1.S2_at--1128--6331Chr03:9941706..9941730 (25 bp)
GATGCTCCAGAAGTCTAGCACTACT
NONE
Target Sequence 
GCAGGATTATTTCTTTGCTTTAAGTTTTTACTAATTTTTACTATGGTTATTGGTCACTGGTCAGATAAGGGTACATACAT
ATATTTGCGTAGTATAAACATATTAAAGAAACTCAGCTTAGTGTATGCAAGGGGGCATGGAACAACTCTGATTCTGAATA
GGAATAACTTCTTCCTTTTTCTGGGCTAGGAATTTGAGTGTTTACTTTTTCATTAACAAGCCTTATATGCTCCTAGCTAG
CAGCTGCTGGTGAATTGATAAAATTTTGGTGATTTTGTCCTAACGCTTCAAATTTTGTTTTNGGTAGATCCAAGGACAAA
TATATTCTCCAAACACATGAACTTTTGTTAAAGAAAAATAAGATATTTTATTTTGATGCACAAGTATGTGCTATAGACCC
AACCTCTACCCAGGGGCACACGACCAAAACACATTCCATGATGCTCCAGAAGTCTAGCACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57571.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis