Browse Element(s) Details


Os.18287.1.S1_at

Description gb:AK121286.1
DB_XREF= gi:37990909
TID=Os.18287.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108P09, full insert sequence.
FL= gb:AK121286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1273011/11Receptor protein kinase CLAVATA1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA
LOC_Os03g12750OsAffx.25074.1.S1_at9/113+6795264..6798259hypothetical protein
LOC_Os03g12750Os.57571.1.S2_at4/113+6795264..6798259hypothetical protein
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18287.1.S1_at--574--6131Chr03:6784250..6784274 (25 bp)
GAGGGCGTCACGAAGATCGCCGACC
LOC_Os03g12730
Os.18287.1.S1_at--611--1871Chr03:6784200..6784225 (25 bp)
ACGAGTGACGCACGTCTTCTACGTC
LOC_Os03g12730
Os.18287.1.S1_at--836--7951Chr03:6783984..6784008 (25 bp)
GGATCTCCTTAGCATCTAGAAGCGT
LOC_Os03g12730
Os.18287.1.S1_at--1001--10011Chr03:6783968..6783992 (25 bp)
TAGAAGCGTGCGTGCATGTCCCCGT
LOC_Os03g12730
Os.18287.1.S1_at--792--6631Chr03:6783945..6783969 (25 bp)
GTTGTACCGGTACTCCGTAGCATCA
LOC_Os03g12730
Os.18287.1.S1_at--989--411Chr03:6783924..6783948 (25 bp)
ATCATCCCCTGTACGTCTTGGCGTA
LOC_Os03g12730
Os.18287.1.S1_at--92--10871Chr03:6783907..6783931 (25 bp)
TTGGCGTACTCCTGGACTGTGCTGG
LOC_Os03g12730
Os.18287.1.S1_at--798--7692Chr03:6783859..6783883 (25 bp)
GGGTCCGAGTCCAAGTAGAGGCAAA
LOC_Os03g12730
Os.18287.1.S1_at--600--2271Chr03:6783837..6783861 (25 bp)
AAATCTCCAATATTTGCGGTAGTAT
LOC_Os03g12730
Os.18287.1.S1_at--165--6951Chr03:6783754..6783778 (25 bp)
GTAGTATGTAATCTGTCTCCTCTCG
LOC_Os03g12730
Os.18287.1.S1_at--1116--9491Chr03:6783739..6783763 (25 bp)
TCTCCTCTCGTGTACAAAGCAACTA
LOC_Os03g12730
Target Sequence 
GAGGGCGTCACGAAGATCGCCGACCCACGGCTCTCGACGGTGCCCCTCCACGAGTGACGCACGTCTTCTACGTCGCCATG
CTGTGCGTCGCCGAGCAGAGCGTCGAGCGGCCGACGATGCGGGAGGTCGTGCAGATCTTGANCCGACCTGCCCNGGTACG
NCGNCGNCGACGGCCNATGGACGCGCCGTCGCACGGGTCGGGGAAAGAGCAAGACCGGAGCGCGGAGATGCAGCAGCAGG
ACGGGTCACGCGAGTCCCCGCCACAGCAGGATCTCCTTAGCATCTAGAAGCGTGCGTGCATGTCCCCGTTGTACCGGTAC
TCCGTAGCATCATCCCCTGTACGTCTTGGCGTACTCCTGGACTGTGCTGGTGTCCTGGACTGTGCTGGTGTCCGGGTCCG
AGTCCAAGTAGAGGCAAATCTCCAATATTTGCGGTAGTATTGTTAGCTAGATTAAGATTATATTGTTACATAATGGTGGT
TGATAAAATCTACTACTAGTAGTATGTAATCTGTCTCCTCTCGTGTACAAAGCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis