Browse Element(s) Details


Os.10898.1.S1_at

Description gb:AK101799.1
DB_XREF= gi:32987008
TID=Os.10898.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066F19, full insert sequence.
FL= gb:AK101799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10898.1.S1_at--732--8171Chr03:6768718..6768742 (25 bp)
GGAACTTCTGAAACTGTCTACAATA
LOC_Os03g12720
Os.10898.1.S1_at--355--4991Chr03:6768765..6768789 (25 bp)
GCAGGACCCTCCTTCAAAGAAACTG
LOC_Os03g12720
Os.10898.1.S1_at--492--2791Chr03:6768803..6768827 (25 bp)
AAGAGGAGCAAGTGTCCCCAGCAAA
LOC_Os03g12720
Os.10898.1.S1_at--982--2511Chr03:6768834..6768858 (25 bp)
AACTTCTGTTGCAGTCCAGCTGGAA
LOC_Os03g12720
Os.10898.1.S1_at--837--7871Chr03:6768889..6768913 (25 bp)
GGTTTCAGTGATCATCAGCGCAGCA
LOC_Os03g12720
Os.10898.1.S1_at--813--1631Chr03:6768905..6768929 (25 bp)
AGCGCAGCAACATCATGGCAACTCA
LOC_Os03g12720
Os.10898.1.S1_at--1109--2271Chr03:6768975..6768999 (25 bp)
AAATGAAGGTGAGCCCAACGCCGTT
LOC_Os03g12720
Os.10898.1.S1_at--892--7271Chr03:6769036..6769060 (25 bp)
GTGCCTCCTGGGTTTGGTTAACATC
LOC_Os03g12720
Os.10898.1.S1_at--194--10351Chr03:6769120..6769144 (25 bp)
TTTAGTTTACATTTGCTGCTCGAGG
LOC_Os03g12720
Os.10898.1.S1_at--34--6311Chr03:6769185..6769209 (25 bp)
GATGAGTTCATGTTGCTCCTAGCTT
LOC_Os03g12720
Os.10898.1.S1_at--88--4311Chr03:6769202..6769226 (25 bp)
CCTAGCTTCAGCCTCTTATTTATGA
LOC_Os03g12720
Target Sequence 
GGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAA
TGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAAC
CACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAAT
CATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGT
GCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAAT
GATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGT
TGCTCCTAGCTTCAGCCTCTTATTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis