Browse Element(s) Details


OsAffx.25072.1.S1_at

Description tigr:9631.m01194
TID=OsAffx.25072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25072.1.S1_at--724--9631Chr03:6754324..6754348 (25 bp)
TCATGGCGCCCATCGCATGGAGGGC
LOC_Os03g12690
OsAffx.25072.1.S1_at--179--8071Chr03:6754236..6754260 (25 bp)
GGAGAAGATATCCATGCTGTCCGGA
LOC_Os03g12690
OsAffx.25072.1.S1_at--250--251Chr03:6754229..6754253 (25 bp)
ATATCCATGCTGTCCGGATACGAGC
LOC_Os03g12690
OsAffx.25072.1.S1_at--964--611Chr03:6754223..6754247 (25 bp)
ATGCTGTCCGGATACGAGCGACTTC
LOC_Os03g12690
OsAffx.25072.1.S1_at--886--6471Chr03:6754213..6754237 (25 bp)
GATACGAGCGACTTCCGAGCGTGTA
LOC_Os03g12690
OsAffx.25072.1.S1_at--1152--1631Chr03:6754207..6754231 (25 bp)
AGCGACTTCCGAGCGTGTATGGCAC
LOC_Os03g12690
OsAffx.25072.1.S1_at--941--10571Chr03:6754201..6754225 (25 bp)
TTCCGAGCGTGTATGGCACGGCGTT
LOC_Os03g12690
OsAffx.25072.1.S1_at--189--6931Chr03:6754191..6754215 (25 bp)
GTATGGCACGGCGTTCCACGACGAC
LOC_Os03g12690
OsAffx.25072.1.S1_at--192--4251Chr03:6754078..6754102 (25 bp)
CCGTCCAGAGGCCTGGGAGGTGCAG
LOC_Os03g12690
OsAffx.25072.1.S1_at--84--8651Chr03:6754065..6754089 (25 bp)
TGGGAGGTGCAGGTGCCCCGGAGAC
LOC_Os03g12690
OsAffx.25072.1.S1_at--239--1871Chr03:6754025..6754049 (25 bp)
ACGACGACCAAGGAGCGGAGGCGGT
LOC_Os03g12690
Target Sequence 
TCATGGCGCCCATCGCATGGAGGGCGGCGCCCACGGCGGCGTCGGCGTCGTCGTCGTCGTACCTGGTCGCCGCCGAGGCC
GGCGGGGTGGAGAAGATATCCATGCTGTCCGGATACGAGCGACTTCCGAGCGTGTATGGCACGGCGTTCCACGACGACGA
CGGCGGCGGCGCGTGGTCGTCGTCGTCGTCGCCGCCGGCGTGCCCTCCCCGCGCGGCCAGGCTGCTCTGGGGGGCGCTCA
CCCGCGCCGTCCAGAGGCCTGGGAGGTGCAGGTGCCCCGGAGACGAGGAGGCGGGGGTGACGACGACCAAGGAGCGGAGG
CGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis