Browse Element(s) Details


OsAffx.25073.1.S1_x_at

Description tigr:9631.m01196
TID=OsAffx.25073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25073.1.S1_x_at--420--5551Chr03:6756144..6756168 (25 bp)
GAAACGCTGCCTCCGAAGCATGAAA
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--907--1851Chr03:6755921..6755945 (25 bp)
ACGACGGCGATTTCTCGTGGTTCAC
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--145--9451Chr03:6755882..6755906 (25 bp)
TCGGCGTCGGCATCAGCGTAGGCAT
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--1028--6611Chr03:6755819..6755843 (25 bp)
GTTCGTACCACTCTACGTCGAGGAG
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--264--4751Chr03:6755782..6755806 (25 bp)
GCTGATCTCGAGTCTGTTCTGAACA
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--826--10731Chr03:6755751..6755775 (25 bp)
TTGCATCAAGATCACTGTCCATCTC
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--173--6511Chr03:6755718..6755742 (25 bp)
GATATCCCTCTGTTGGAGATGGACT
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--319--6871Chr03:6755663..6755687 (25 bp)
GTATAGTTGTTACTACCGTCGTAGA
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--1011--10111Chr03:6755624..6755648 (25 bp)
TATCTTTGGCACTGTTGGTTCACTG
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--1124--3151Chr03:6755570..6755594 (25 bp)
AATTGAGACCCTTTCATATCTACCC
LOC_Os03g12700
OsAffx.25073.1.S1_x_at--1143--431Chr03:6755511..6755535 (25 bp)
ATCTAGTCTAGAGCCCTATGTTGTT
LOC_Os03g12700
Target Sequence 
GAAACGCTGCCTCCGAAGCATGAAACCGAGGTGTCGGAGTACAGGTGCTACAAGCCGGAGCAGGACGCCGGCGACGCCGA
CTACGACGGCTTCTACGTGAAGCCTGCAGGCGAGGAAGACGACGACGGCGATTTCTCGTGGTTCACCGCCGGCGTCAGAG
TCGGCGTCGGCATCAGCGTAGGCATCTGCCTCGGCATCGGCATCGGCGCCGGCCTCCTGGCCCGTTCGTACCACTCTACG
TCGAGGAGCCTGAGAAGCCGGCTGATCTCGAGTCTGTTCTGAACATCAACATTGCATCAAGATCACTGTCCATCTCAAAA
TTCAGATATCCCTCTGTTGGAGATGGACTAGTCCAGTGTGTGTGTATATATCCTTGTTAGTATAGTTGTTACTACCGTCG
TAGATAGATGAGATGTGCTATCTTTGGCACTGTTGGTTCACTGGTTTATACTTATATGATCAGGCATTGTCAAATTGAGA
CCCTTTCATATCTACCCAGATCGATCAATCGATGTCATTGATCACTAGTGCATCTAGTCTAGAGCCCTATGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25073.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis