Browse Element(s) Details


Os.12264.1.S1_a_at

Description gb:AK063571.1
DB_XREF= gi:32973589
TID=Os.12264.1
CNT=103
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G06, full insert sequence.
FL= gb:AK061960.1 gb:AK063571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g126703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12264.1.S1_a_at--1019--4211Chr03:6733462..6733486 (25 bp)
CCGAATCCCTTCCATGGTAGGACTT
NONE
Os.12264.1.S1_a_at--204--791Chr03:6733475..6733499 (25 bp)
ATGGTAGGACTTCCGTTTGATTCCG
NONE
Os.12264.1.S1_a_at--543--10251Chr03:6733490..6733514 (25 bp)
TTTGATTCCGGGTCGAATCCGTCGC
NONE
Os.12264.1.S1_a_at--831--10651Chr03:6733539..6733563 (25 bp)
TTCCCTCCCTTTATATGGACAACAC
NONE
Os.12264.1.S1_a_at--599--8111Chr03:6733555..6733579 (25 bp)
GGACAACACGCGTTTGTTTTTTCTG
NONE
Os.12264.1.S1_a_at--843--6811Chr03:6733570..6733594 (25 bp)
GTTTTTTCTGTTGCGCAGGTTTCAG
NONE
Os.12264.1.S1_a_at--1156--6671Chr03:6733579..6733603 (25 bp)
GTTGCGCAGGTTTCAGATCTTGGAT
NONE
Os.12264.1.S1_a_at--48--9651Chr03:6733591..6733615 (25 bp)
TCAGATCTTGGATGGACTTGCTCAT
NONE
Os.12264.1.S1_a_at--474--3811Chr03:6733845..6733869 (25 bp)
CTCCGTACGAGCTGGCGTGGATGAA
LOC_Os03g12670
Os.12264.1.S1_a_at--559--9331Chr03:6733924..6733948 (25 bp)
TCGCGCGATGATGTCTCTTTGTATT
LOC_Os03g12670
Os.12264.1.S1_a_at--947--3731Chr03:6733985..6734009 (25 bp)
CTAAGAGATGTTGTTCGAGGGAGCC
LOC_Os03g12670
Target Sequence 
CCGAATCCCTTCCATGGTAGGACTTCCGTTTGATTCCGGGTCGAATCCGTCGCCTCCGATGCCGGAACGGTGAGGTTTTC
CCTCCCTTTATATGGACAACACGCGTTTGTTTTTTCTGTTGCGCAGGTTTCAGATCTTGGATGGACTTGCTCATCCTTCG
GCGGCCATGGATCTATCGGCGGAAGCTGCTGCTGCTGCTCGTCCTCGCGTTCGGCGAGTCAGATCTGGAGCCGATCTGAC
CTCTTAGAGGTCCGGTTGGGGCATGCTCCGTACGAGCTGGCGTGGATGAAGCGGCGGGGCGAGGGAGGAGGCTGGTCGTC
GCCTGGATCCTCTCCATCGGGGCCTCGCGCGATGATGTCTCTTTGTATTGATAATTATTCGATGAACTTTCGATAATTAT
TAGATCTAAGAGATGTTGTTCGAGGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12264.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis