Browse Element(s) Details


OsAffx.10060.1.S1_at

Description tigr:9631.m01191
TID=OsAffx.10060.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1266010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10060.1.S1_at--539--6031NONE
GAGATGGTTTTCACGCAATGTGTCA
NONE
OsAffx.10060.1.S1_at--919--8131Chr03:6722025..6722049 (25 bp)
GGAAACGTGGTCAGGTTCCTGCACC
LOC_Os03g12660
OsAffx.10060.1.S1_at--1067--6691Chr03:6722039..6722063 (25 bp)
GTTCCTGCACCGGAAGGTCATCAAG
LOC_Os03g12660
OsAffx.10060.1.S1_at--486--371Chr03:6722058..6722081 (24 bp)
ATCAAGGACGTGCACTACAAGGGTT
LOC_Os03g12660
OsAffx.10060.1.S1_at--442--2891Chr03:6722176..6722197 (22 bp)
AAGGGTTATGACATTCCAAGCGGAT
LOC_Os03g12660
OsAffx.10060.1.S1_at--342--851Chr03:6722196..6722220 (25 bp)
ATGGAAGATCCTGCCGGTGTTAGCC
LOC_Os03g12660
OsAffx.10060.1.S1_at--109--7431Chr03:6722212..6722236 (25 bp)
GTGTTAGCCGCGGTGCATCTGGACT
LOC_Os03g12660
OsAffx.10060.1.S1_at--841--3371Chr03:6722257..6722281 (25 bp)
CAGCGCTTCAATCCCTGGAGATGGA
LOC_Os03g12660
OsAffx.10060.1.S1_at--350--8551Chr03:6723265..6723289 (25 bp)
TGGAGATGGCCGTGTTCTTGCACCA
LOC_Os03g12660
OsAffx.10060.1.S1_at--390--9711Chr03:6723298..6723322 (25 bp)
TCAACTTCAGGTGGGAGCTCGCCGA
LOC_Os03g12660
OsAffx.10060.1.S1_at--763--3191Chr03:6723362..6723386 (25 bp)
CAAGGGCCTTCCCATTAGGGTTCAT
LOC_Os03g12660
Target Sequence 
GAGATGGTTTTCACGCAATGTGTCATAAACGAGACGTTGCGGCTAGGAAACGTGGTCAGGTTCCTGCACCGGAAGGTCAT
CAAGGACGTGCACTACAAGGGTTATGACATTCCAAGCGGATGGAAGATCCTGCCGGTGTTAGCCGCGGTGCATCTGGACT
CGTCCCTGTACGAGGACCCCCAGCGCTTCAATCCCTGGAGATGGAAGAGTAGCGGATCATCCGGCGGCTTGGCTCAGAGC
AGCAGCTTCATGCCGTACGGCGGCGGGACGCGGCTGTGCGCCGGGTCGGAGCTCGCGAAGCTGGAGATGGCCGTGTTCTT
GCACCACCTGGTGCTCAACTTCAGGTGGGAGCTCGCCGAGCCGGACCAAGCCTTCGTCTTCCCCTTCGTCGACTTCCCCA
AGGGCCTTCCCATTAGGGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis