Browse Element(s) Details


Os.53367.1.S1_at

Description gb:AK072301.1
DB_XREF= gi:32982324
TID=Os.53367.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022A03, full insert sequence.
FL= gb:AK072301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53367.1.S1_at--841--671Chr03:6698592..6698616 (25 bp)
ATGAGCTCTTAGTATTTGCAATCTG
LOC_Os03g12630
Os.53367.1.S1_at--643--5571Chr03:6698657..6698681 (25 bp)
GAAAGTATCTTGCTTGTCTATAATG
LOC_Os03g12630
Os.53367.1.S1_at--882--671Chr03:6698715..6698739 (25 bp)
ATGAGCTTTAGGTAGGTATTCGCAA
LOC_Os03g12630
Os.53367.1.S1_at--1127--6851Chr03:6698730..6698754 (25 bp)
GTATTCGCAACTGGAATTCCTAGGT
LOC_Os03g12630
Os.53367.1.S1_at--39--6931Chr03:6698753..6698777 (25 bp)
GTGATTTTCATTTCGGTAGGCCGGT
LOC_Os03g12630
Os.53367.1.S1_at--89--6631Chr03:6698795..6698819 (25 bp)
GTTGGTTGTTGCTATCCTGCTTCTG
LOC_Os03g12630
Os.53367.1.S1_at--26--10411Chr03:6698826..6698850 (25 bp)
TTTTGACTTCTGAGGCCTTTGTTAT
LOC_Os03g12630
Os.53367.1.S1_at--54--6231Chr03:6698837..6698861 (25 bp)
GAGGCCTTTGTTATTGCTCTTAAAT
LOC_Os03g12630
Os.53367.1.S1_at--1130--2271Chr03:6698858..6698882 (25 bp)
AAATCCATGATCCTTTATGTTGCAG
LOC_Os03g12630
Os.53367.1.S1_at--898--3671Chr03:6698870..6698894 (25 bp)
CTTTATGTTGCAGGCGGGATCTCAA
LOC_Os03g12630
Os.53367.1.S1_at--286--10051Chr03:6699141..6699165 (25 bp)
TAGGAAATTGCCTGCTTTACTTAAT
LOC_Os03g12630
Target Sequence 
ATGAGCTCTTAGTATTTGCAATCTGGAAATCCTTGTTGATTTTTTAAAGTCTAAACTACTATATAGAAAGTATCTTGCTT
GTCTATAATGAAACTGATAGAGGAAATACTATAGCTTGTGAAAATGAGCTTTAGGTAGGTATTCGCAACTGGAATTCCTA
GGTGATTTTCATTTCGGTAGGCCGGTAGCACAATATATAATCTGTTGGTTGTTGCTATCCTGCTTCTGCTTCTGTTTTGA
CTTCTGAGGCCTTTGTTATTGCTCTTAAATCCATGATCCTTTATGTTGCAGGCGGGATCTCAAGGTTGCTCTCTTCTATG
CTATCTTGTTTTGTTTTGTCATGGTGTCCTGCTATGTTGCCCTTTACTTGAGATGGTTCAGACTTTCAGCCATCTTTGTA
GTTTTCGGAATTCTCCTTCCAGTAGGTCTCAAAATATCTAGGCATAGAAGGCTGAAGAGGAAAAGAGAAAGGAGATTGTT
GTTACCTTTGTCCATGTGAATATATTTTTGATATCTTGTAACATTGTAGTAAAACCGCGCAACTGCAAATAGGAAATTGC
CTGCTTTACTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis