Browse Element(s) Details


OsAffx.9045.1.S1_x_at

Description gb:NM_193214.1
DB_XREF= gi:34913511
GEN=OJ1029_F04.7
TID=OsAffx.9045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.7 (OJ1029_F04.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g094004/11retrotransposon protein, putative, unclassified
LOC_Os04g460794/11phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os09g398804/11hypothetical protein
LOC_Os01g123404/11retrotransposon protein, putative, unclassified
LOC_Os03g126503/11retrotransposon protein, putative, unclassified
LOC_Os06g499503/11retrotransposon protein, putative, unclassified
LOC_Os09g400503/11retrotransposon protein, putative, unclassified
LOC_Os02g536403/11retrotransposon protein, putative, unclassified
LOC_Os08g240201/11retrotransposon protein, putative, unclassified
LOC_Os07g360101/11transposon protein, putative, unclassified
LOC_Os08g240401/11retrotransposon protein, putative, unclassified
LOC_Os03g023701/11calcineurin-like phosphoesterase family protein, putative
LOC_Os07g462601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g163001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed
LOC_Os11g09380OsAffx.18762.1.S1_at11/1111+5028891..5031282transposon protein, putative, unclassified
LOC_Os11g09390Os.2987.3.S1_x_at2/1111+5032186..5032998retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09400OsAffx.9045.1.S1_x_at4/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.9045.1.S1_at3/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_x_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.2.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.5.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420Os.6227.2.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09430Os.54089.1.S1_at10/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09430Os.54089.2.S1_at7/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09440Os.51921.1.S1_at2/1111+5059817..5061237Histone deacetylase family protein
LOC_Os11g09450OsAffx.6125.1.S1_at10/1111+5062116..5063706hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9045.1.S1_x_at--783--10631Chr01:19654436..19654460 (25 bp)
TTCGAGCGTCGAGGGAGCTCCACGT
NONE
OsAffx.9045.1.S1_x_at--153--9391Chr01:19654444..19654468 (25 bp)
TCGAGGGAGCTCCACGTGCCAATGA
NONE
OsAffx.9045.1.S1_x_at--891--8071Chr01:19654449..19654473 (25 bp)
GGAGCTCCACGTGCCAATGACGGGC
NONE
OsAffx.9045.1.S1_x_at--1133--3311Chr01:19654456..19654480 (25 bp)
CACGTGCCAATGACGGGCCGTGCCT
NONE
OsAffx.9045.1.S1_x_at--792--6611Chr01:19654485..19654509 (25 bp)
GTTGGCACGACACGGCCCGCTACGA
NONE
OsAffx.9045.1.S1_x_at--589--4851Chr01:19654503..19654523 (21 bp)
GCTACGAAAACCGTGCTGCTGATCT
NONE
OsAffx.9045.1.S1_x_at--785--7311NONE
GTGCTGCTGATCTCCCAAAACACAG
NONE
OsAffx.9045.1.S1_x_at--583--911148Chr12:26562571..26562591 (21 bp)
TGCTGATCTCCCAAAACACAGGAGT
NONE
OsAffx.9045.1.S1_x_at--497--86762Chr12:26562642..26562666 (25 bp)
TGTGTGTTTCCTGTCTCGCGAGCCT
NONE
OsAffx.9045.1.S1_x_at--1086--37970Chr12:9171414..9171438 (25 bp)
CTCGCGAGCCTTCCACATACAGAGA
NONE
OsAffx.9045.1.S1_x_at--604--13559Chr12:15301148..15301172 (25 bp)
AGAGCTTAGAATCTCTCCCTGAGTC
NONE
Target Sequence 
TTCGAGCGTCGAGGGAGCTCCACGTGCCAATGACGGGCCGTGCCTTGGGGTTGGCACGACACGGCCCGCTACGAAAACCG
TGCTGCTGATCTCCCAAAACACAGGAGTAGGGTATTACGCTTCTCAGCGGCCCGAACCTGTATACATCGCGTGTGTCTTG
TGTGTTTCCTGTCTCGCGAGCCTTCCACATACAGAGAGCTTAGAATCTCTCCCTGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9045.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis