Browse Element(s) Details


OsAffx.18762.1.S1_at

Description tigr:9639.m00889
TID=OsAffx.18762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0938011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed
LOC_Os11g09380OsAffx.18762.1.S1_at11/1111+5028891..5031282transposon protein, putative, unclassified
LOC_Os11g09390Os.2987.3.S1_x_at2/1111+5032186..5032998retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09400OsAffx.9045.1.S1_x_at4/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.9045.1.S1_at3/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_x_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.2.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.5.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420Os.6227.2.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09430Os.54089.1.S1_at10/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09430Os.54089.2.S1_at7/1111+5055794..5059764F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18762.1.S1_at--908--711Chr11:5030084..5030108 (25 bp)
ATGATCCTGGTACATGTGTTTGTTG
LOC_Os11g09380
OsAffx.18762.1.S1_at--402--10531Chr11:5030016..5030040 (25 bp)
TTCAGAGGTCTGTCAAATGCTGCAA
LOC_Os11g09380
OsAffx.18762.1.S1_at--753--10271Chr11:5029518..5029542 (25 bp)
TTTGCTTCTTGATGGATGGGTCGTT
LOC_Os11g09380
OsAffx.18762.1.S1_at--515--7211Chr11:5029499..5029523 (25 bp)
GTCGTTGGGCATAATTTCTGCGCTC
LOC_Os11g09380
OsAffx.18762.1.S1_at--134--3751Chr11:5029477..5029501 (25 bp)
CTCTTGGTTGCTTTCTCCAACAAAC
LOC_Os11g09380
OsAffx.18762.1.S1_at--154--3231Chr11:5029204..5029228 (25 bp)
CAAGATCTTGAATGCCTGTGGCGTT
LOC_Os11g09380
OsAffx.18762.1.S1_at--829--7531Chr11:5029187..5029211 (25 bp)
GTGGCGTTTCTCCTGACAAAATCAC
LOC_Os11g09380
OsAffx.18762.1.S1_at--481--371Chr11:5028986..5029191 (25 bp)
ATCACTATCCAGCATTACATTTACA
LOC_Os11g09380
OsAffx.18762.1.S1_at--110--5391Chr11:5028951..5028975 (25 bp)
GAAGCAAGCATTACGGTTCAGCAAT
LOC_Os11g09380
OsAffx.18762.1.S1_at--653--7891Chr11:5028937..5028961 (25 bp)
GGTTCAGCAATAGTTCAGCAGCAGA
LOC_Os11g09380
OsAffx.18762.1.S1_at--617--1511Chr11:5028921..5028945 (25 bp)
AGCAGCAGAGGTCAGCAACAGTTCA
LOC_Os11g09380
Target Sequence 
ATGATCCTGGTACATGTGTTTGTTGTGATGGTGATCCTGACGGTGATGGCAGTGTCAAGTATAAGTTTTTCAGAGGTCTG
TCAAATGCTGCAAATTTGGAATTAGTAGCTGAAGCTGGGATGCAAGACTTGACATGGTGCCCCACATTCAGCAAGTTAAA
GACTTTGCTTCTTGATGGATGGGTCGTTGGGCATAATTTCTGCGCTCTTGGTTGCTTTCTCCAACAAACATCAATTCTGG
AGAAGCTCACTCTTCAACTTTATAAGGGCCATGAAGATATGGTGGAAATTGAAGAAAGTAGCAGTTCAATTGGACAATTG
GTCCAGTTTCAGAACCTTGAAAGAGTCAAAGTAAGATGTTTAAGGAATGAAGAATGGGTTCACAAAGTTTTCAAGATCTT
GAATGCCTGTGGCGTTTCTCCTGACAAAATCACTATCCAGCATTACATTTACATTATAAATATGAAGCAAGCATTACGGT
TCAGCAATAGTTCAGCAGCAGAGGTCAGCAACAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis