Browse Element(s) Details


Os.54089.2.S1_at

Description gb:AK111444.1
DB_XREF= gi:32996653
TID=Os.54089.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A11, full insert sequence.
FL= gb:AK111444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g094307/11F-box domain containing protein, expressed
LOC_Os10g342901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09380OsAffx.18762.1.S1_at11/1111+5028891..5031282transposon protein, putative, unclassified
LOC_Os11g09390Os.2987.3.S1_x_at2/1111+5032186..5032998retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09400OsAffx.9045.1.S1_x_at4/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.9045.1.S1_at3/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_x_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09400OsAffx.5632.1.S1_at2/1111+5036244..5038391retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.2.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09410Os.31312.5.S1_x_at4/1111+5039537..5042795retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420Os.6227.2.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09430Os.54089.1.S1_at10/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09430Os.54089.2.S1_at7/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09440Os.51921.1.S1_at2/1111+5059817..5061237Histone deacetylase family protein
LOC_Os11g09450OsAffx.6125.1.S1_at10/1111+5062116..5063706hypothetical protein
LOC_Os11g09460Os.27333.2.S1_x_at11/1111+5068519..5070176expressed protein
LOC_Os11g09460Os.27333.3.S1_at11/1111+5068519..5070176expressed protein
LOC_Os11g09470Os.27333.1.S1_at7/1111+5071641..5072196hypothetical protein
LOC_Os11g09480NANA11+5075544..5077911F-box domain containing protein, expressed
LOC_Os11g09490Os.54744.1.S1_at3/1111+5081529..5083880F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54089.2.S1_at--935--8671Chr11:5057074..5057097 (24 bp)
TGTGTTCATTTCTGACTTGTCTTCC
LOC_Os11g09430
Os.54089.2.S1_at--795--8951Chr11:5057085..5057109 (25 bp)
TGACTTGTCTTCCAGCCAATTTTTG
LOC_Os11g09430
Os.54089.2.S1_at--826--4351NONE
CCAGCCAATTTTTGCCATTCATACT
NONE
Os.54089.2.S1_at--1147--9171NONE
TGCCATTCATACTATCAAACACTAC
NONE
Os.54089.2.S1_at--1141--2131Chr11:5057156..5057180 (25 bp)
ACAGAATTCTATGTGTTACCATGGA
LOC_Os11g09430
Os.54089.2.S1_at--140--9991Chr11:5057172..5057196 (25 bp)
TACCATGGATTTCTGTTCTGCCTTA
LOC_Os11g09430
Os.54089.2.S1_at--1038--8791Chr11:5057185..5057209 (25 bp)
TGTTCTGCCTTACCATGTTTCAATG
LOC_Os11g09430
Os.54089.2.S1_at--93--5611NONE
GACATCCCCTGAACGTTGGTTTGTG
NONE
Os.54089.2.S1_at--207--7491NONE
GTGGGCAGGGTGAACTATTGAATTA
NONE
Os.54089.2.S1_at--406--813Chr11:5057264..5057288 (25 bp)
ATGGTTTTGAAGCTTGTGACATCAA
LOC_Os11g09430
Os.54089.2.S1_at--894--4931Chr11:5057275..5057299 (25 bp)
GCTTGTGACATCAATATGTTTTCTA
LOC_Os11g09430
Target Sequence 
TGTGTTCATTTCTGACTTGTCTTCCAGCCAATTTTTGCCATTCATACTATCAAACACTACATATTCATTAGCTTTATATT
CAAACAGAATTCTATGTGTTACCATGGATTTCTGTTCTGCCTTACCATGTTTCAATGAGGACATCCCCTGAACGTTGGTT
TGTGTGGGTGGGCAGGGTGAACTATTGAATTATATGGTTTTGAAGCTTGTGACATCAATATGTTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54089.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis