Browse Element(s) Details


Os.54744.1.S1_at

Description gb:AK106650.1
DB_XREF= gi:32991859
TID=Os.54744.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F09, full insert sequence.
FL= gb:AK106650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g094903/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09430Os.54089.1.S1_at10/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09430Os.54089.2.S1_at7/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09440Os.51921.1.S1_at2/1111+5059817..5061237Histone deacetylase family protein
LOC_Os11g09450OsAffx.6125.1.S1_at10/1111+5062116..5063706hypothetical protein
LOC_Os11g09460Os.27333.2.S1_x_at11/1111+5068519..5070176expressed protein
LOC_Os11g09460Os.27333.3.S1_at11/1111+5068519..5070176expressed protein
LOC_Os11g09470Os.27333.1.S1_at7/1111+5071641..5072196hypothetical protein
LOC_Os11g09480NANA11+5075544..5077911F-box domain containing protein, expressed
LOC_Os11g09490Os.54744.1.S1_at3/1111+5081529..5083880F-box domain containing protein
LOC_Os11g09500NANA11+5086336..5088670F-box domain containing protein
LOC_Os11g09510OsAffx.18763.1.S1_at11/1111+5092787..5095348F-box domain containing protein
LOC_Os11g09520NANA11+5099306..5100973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530OsAffx.30900.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530Os.46601.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54744.1.S1_at--60--6111Chr11:5082333..5082357 (25 bp)
GAGTCTGCTGAAAACTGTGCACTAA
LOC_Os11g09490
Os.54744.1.S1_at--1022--151Chr11:5082041..5082065 (25 bp)
ATTATGTCCTTGAACAGCTACGGCA
LOC_Os11g09490
Os.54744.1.S1_at--403--1551Chr11:5082026..5082050 (25 bp)
AGCTACGGCATTCCACCTGAGAAAA
LOC_Os11g09490
Os.54744.1.S1_at--144--1011Chr11:5079674..5079698 (25 bp)
AGGATTCATCCCAAGGCAGAGCTAC
NONE
Os.54744.1.S1_at--1005--4371Chr11:5079650..5079674 (25 bp)
CCAAGCATCCGAGCTGTCCATGTAT
NONE
Os.54744.1.S1_at--212--111Chr11:5079627..5079651 (25 bp)
ATATCCGGTCTCCTTAATTTGCTAT
NONE
Os.54744.1.S1_at--1081--1471Chr11:5079594..5079618 (25 bp)
AGCAAGTTTGCAGTCACCAGGTGTT
NONE
Os.54744.1.S1_at--497--4331Chr11:5079578..5079602 (25 bp)
CCAGGTGTTGCTGTCTGAAACCAAT
NONE
Os.54744.1.S1_at--286--3051Chr11:5079541..5079565 (25 bp)
AATCTGTTCCAAACCTGTTGGTGAG
NONE
Os.54744.1.S1_at--310--1311Chr11:5079486..5079510 (25 bp)
AGATGTGGCTGGACCTAGATTTTAT
NONE
Os.54744.1.S1_at--421--151Chr11:5079463..5079487 (25 bp)
ATTAGCTCTCAAGTTTTGATCCAGA
NONE
Target Sequence 
GAGTCTGCTGAAAACTGTGCACTAATTTGCATTCTTCAACACTCACCATTTCTAGAGAAGCTCACTCTTCAGCTTTCTAA
GAAACCTGACATCAATATGCGATCAAGAGCAATCTACAATTCGATGGGAAAATCATTTGCATCAGATAACCTTAAGACAG
TTGAAGTTAAATGTCAAGATATCGACAAGAAAGTTCATAAACTTATTATGTCCTTGAACAGCTACGGCATTCCACCTGAG
AAAATTAATATTCAACAAACAAATGAATCATATGAGTGTTTTAATTTCGTTTGGACAGGATTCATCCCAAGGCAGAGCTA
CCAAGCATCCGAGCTGTCCATGTATATCCGGTCTCCTTAATTTGCTATGGATGTAGAGCAAGTTTGCAGTCACCAGGTGT
TGCTGTCTGAAACCAATGGGAGTGTTAAAAATCTGTTCCAAACCTGTTGGTGAGGCTTGGTAATACGACTTTGTGTAGAT
AACTAGATGTGGCTGGACCTAGATTTTATTAGCTCTCAAGTTTTGATCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis