Browse Element(s) Details


Os.46601.1.S1_at

Description gb:NM_196097.1
DB_XREF= gi:37533553
TID=Os.46601.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46601 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative PPR-repeat protein (OJ1003C07.14), mRNA.
PROD=putative PPR-repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2237011/11pentatricopeptide, putative, expressed
LOC_Os11g095301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46601.1.S1_at--41--391Chr10:11240229..11240253 (25 bp)
ATCATCCGGGCTCTAGTGCGCCGTA
LOC_Os10g22370
Os.46601.1.S1_at--449--1131Chr10:11240215..11240239 (25 bp)
AGTGCGCCGTACTCGACACAGCAGG
LOC_Os10g22370
Os.46601.1.S1_at--323--8151Chr10:11240125..11240149 (25 bp)
GGACAACACCACGATGATGGCGCCA
LOC_Os10g22370
Os.46601.1.S1_at--1060--6211Chr10:11240110..11240134 (25 bp)
GATGGCGCCACTGCCCAAAGGAACA
LOC_Os10g22370
Os.46601.1.S1_at--194--2311Chr10:11240094..11240118 (25 bp)
AAAGGAACACCAGAGCCGGCAACAC
LOC_Os10g22370
Os.46601.1.S1_at--1084--8691Chr10:11240019..11240043 (25 bp)
TGTGCGCTGCACCAGAATGAATTCT
LOC_Os10g22370
Os.46601.1.S1_at--810--3552Chr11:5104563..5104587 (25 bp)
CATCACTGCGAGTCCCATGGGTGGA
LOC_Os11g09530
Os.46601.1.S1_at--224--811Chr10:11239893..11239989 (25 bp)
ATGGGTGGACACATCTTCGCCGCGC
LOC_Os10g22370
Os.46601.1.S1_at--988--531Chr10:11239861..11239885 (25 bp)
ATCGCCGGACTACTCACCAGAGACG
LOC_Os10g22370
Os.46601.1.S1_at--967--4751Chr10:11239834..11239858 (25 bp)
GCTGCACATACCTACACCGGTTATT
LOC_Os10g22370
Os.46601.1.S1_at--278--9871Chr10:11239822..11239846 (25 bp)
TACACCGGTTATTCCGCTGGAGTTC
LOC_Os10g22370
Target Sequence 
ATCATCCGGGCTCTAGTGCGCCGTACTCGACACAGCAGGGGCCGTGGTGCGGGCATTGCCGGCCGTGCCCTCGGTCTCCT
CCCCCTAGCTTCGCTGGACATGGAGGACAACACCACGATGATGGCGCCACTGCCCAAAGGAACACCAGAGCCGGCAACAC
CGACTCCAACACCCTCGCGACTCGCCGAGGGCCTCCGATGGTGCCCGTCATGTGCGCTGCACCAGAATGAATTCTGGTGG
AGTCACCGCATCACTGCGAGTCCCATGGGTGGACACATCTTCGCCGCGCCATCACCATCGCCGGACTACTCACCAGAGAC
GCCGCTGCACATACCTACACCGGTTATTCCGCTGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis