Browse Element(s) Details


Os.7061.1.S1_at

Description gb:AK120131.1
DB_XREF= gi:37989754
TID=Os.7061.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative clathrin assembly protein (OSJNBa0083M08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026P11, full insert sequence.
FL= gb:AK120131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2233010/11Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22260OsAffx.20440.1.S1_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_x_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.2.S1_x_at3/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22270OsAffx.18344.1.S1_at11/1110+11191642..11191958hypothetical protein
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7061.1.S1_at--700--6071Chr10:11212279..11212303 (25 bp)
GAGTTAGCTATCCTTGAATTCATTC
LOC_Os10g22330
Os.7061.1.S1_at--168--3611Chr10:11212239..11212263 (25 bp)
CTATGGACCGTCACTTTGGCAATGT
LOC_Os10g22330
Os.7061.1.S1_at--118--10251NONE
TTTGGCAATGTGTGTGAGCTCGACA
NONE
Os.7061.1.S1_at--373--5911Chr10:11212112..11212136 (25 bp)
GAGCTCGACATTATGTTCCATCTGG
LOC_Os10g22330
Os.7061.1.S1_at--432--9591Chr10:11212018..11212042 (25 bp)
TCTTGGCACCAATCCACCTGATGGA
LOC_Os10g22330
Os.7061.1.S1_at--664--6111Chr10:11211960..11211984 (25 bp)
GAGTGCCTCATACTGTTCTGCTTAT
LOC_Os10g22330
Os.7061.1.S1_at--1000--1791Chr10:11211931..11211955 (25 bp)
ACCGCCTCTGTGCTTCTATAGATTT
LOC_Os10g22330
Os.7061.1.S1_at--344--6531Chr10:11211911..11211935 (25 bp)
GATTTTTCATCTCAATGTGTAACCA
LOC_Os10g22330
Os.7061.1.S1_at--1000--2631Chr10:11211891..11211915 (25 bp)
AACCATCAACGATTTCCATGTGCAT
LOC_Os10g22330
Os.7061.1.S1_at--576--6311Chr10:11211822..11211846 (25 bp)
GATGACGTCTCTGTTCTTTAATGTT
LOC_Os10g22330
Os.7061.1.S1_at--769--6791Chr10:11211800..11211824 (25 bp)
GTTATCTTGCTGTGAGTTGTGTTAT
LOC_Os10g22330
Target Sequence 
GAGTTAGCTATCCTTGAATTCATTCATCTTTTGGTTGAAACTATGGACCGTCACTTTGGCAATGTGTGTGAGCTCGACAT
TATGTTCCATCTGGAGAAGGTGCACTTCATGCTGGAAGAGATGGTGATGAATGGTTGCATTGTNGAAACNTAGTAAACAG
AACATCTTGGCACCAATCCACCTGATGGAGAAAACTTCTTAGAAAAATGCTATCCAACAGGGGAGTGCCTCATACTGTTC
TGCTTATCGCCACCGCCTCTGTGCTTCTATAGATTTTTCATCTCAATGTGTAACCATCAACGATTTCCATGTGCATAGAC
TATTAAACTTGACCTGATAGGAAATAATGAGAATATGACAGATGACGTCTCTGTTCTTTAATGTTATCTTGCTGTGAGTT
GTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis