Browse Element(s) Details


OsAffx.228.1.S1_at

Description gb:NM_196094.1
DB_XREF= gi:37533547
TID=OsAffx.228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0083M08.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2234010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.228.1.S1_at--828--1431Chr10:11217111..11217135 (25 bp)
AGAACTCTTCATATCCAATTGTTGA
LOC_Os10g22340
OsAffx.228.1.S1_at--748--8991Chr10:11217133..11217157 (25 bp)
TGAAGACGGTATTCATGCCTAGCTA
LOC_Os10g22340
OsAffx.228.1.S1_at--669--8531NONE
TGGAGCATACATGTCTTATCAAAGA
NONE
OsAffx.228.1.S1_at--11--2371Chr10:11218195..11218219 (25 bp)
AAAGCGCCTATCAAGAAAGCCATGG
LOC_Os10g22340
OsAffx.228.1.S1_at--1082--3711Chr10:11218228..11218252 (25 bp)
CTAAAACACTCATACGCAATCGGCG
LOC_Os10g22340
OsAffx.228.1.S1_at--170--5091Chr10:11218252..11218276 (25 bp)
GCACCACTTGTCAAGCCAGAGCTGG
LOC_Os10g22340
OsAffx.228.1.S1_at--1095--1591Chr10:11218271..11218295 (25 bp)
AGCTGGTCAAGGAACTAAGTACACA
LOC_Os10g22340
OsAffx.228.1.S1_at--585--8551Chr10:11218330..11218354 (25 bp)
TGGATCAATCAACTCATGGTAGGGT
LOC_Os10g22340
OsAffx.228.1.S1_at--167--3511Chr10:11218344..11218368 (25 bp)
CATGGTAGGGTTATGTTCGCTGAAA
LOC_Os10g22340
OsAffx.228.1.S1_at--313--9811Chr10:11218379..11218403 (25 bp)
TAAAGACTTCTGTGGGATGTACGAT
LOC_Os10g22340
OsAffx.228.1.S1_at--734--2971Chr10:11218429..11218453 (25 bp)
AATGTATACCAACAAGACGCCCTTG
LOC_Os10g22340
Target Sequence 
AGAACTCTTCATATCCAATTGTTGAAGACGGTATTCATGCCTAGCTATAATTGTTGGACCTCGCACGAAGAGTTAGGAGT
TCCAATGGAAGAAGATGAAGAAGAAGGCGACAACATTCCGGACTGGGCTCAATACGATAGATTTGTAGAAAATACAATAG
GCGAGGCGGAAGGAGTTATTGAAGAAAACGACGGTTCGGATGATCTTGGTCAGATGTTGTATGATGTAAAAAAAGATTGC
GAAAGTGAAAAGGAGGTCCGGAAATTGGAGCATACATGTCTTATCAAAGAGCAATTGATGGGGAAAGCGCCTATCAAGAA
AGCCATGGAAGAAGATCTAAAACACTCATACGCAATCGGCGCACCACTTGTCAAGCCAGAGCTGGTCAAGGAACTAAGTA
CACAGATGTATAGATGTATCGATTCCATAAATGGTACATGGATCAATCAACTCATGGTAGGGTTATGTTCGCTGAAAGAT
TTAAAAATAAAGACTTCTGTGGGATGTACGATGTGGATCAAGTTCAAGGATGTGTACAATGTATACCAACAAGACGCCCT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis