Browse Element(s) Details


OsAffx.30498.1.S1_at

Description tigr:9638.m01885
TID=OsAffx.30498.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30498.1.S1_at--261--8051Chr10:11225053..11225077 (25 bp)
GGAGAGAGGCTCAGAACAACTTCGG
LOC_Os10g22350
OsAffx.30498.1.S1_at--228--3951Chr10:11224367..11224391 (25 bp)
CGGCTTTATGGATGGCTATCTCGAC
LOC_Os10g22350
OsAffx.30498.1.S1_at--901--6231Chr10:11224357..11224381 (25 bp)
GATGGCTATCTCGACAGCATTTGTA
LOC_Os10g22350
OsAffx.30498.1.S1_at--979--2151Chr10:11224288..11224312 (25 bp)
ACACTTCCAAAGACGATTGCTGGAC
LOC_Os10g22350
OsAffx.30498.1.S1_at--1103--8051Chr10:11224253..11224277 (25 bp)
GGAGACACTTGATTTCAGGAGAAAT
LOC_Os10g22350
OsAffx.30498.1.S1_at--989--9751Chr10:11224212..11224236 (25 bp)
TAATCTCAGTCGAAGTACTCGTGCT
LOC_Os10g22350
OsAffx.30498.1.S1_at--416--3131Chr10:11224118..11224142 (25 bp)
AATTGAGCCGGGAAAGAGCAACCTG
LOC_Os10g22350
OsAffx.30498.1.S1_at--299--10411Chr10:11224077..11224101 (25 bp)
TTATTGCTGCCAATAACCATGGTTT
LOC_Os10g22350
OsAffx.30498.1.S1_at--523--7091Chr10:11224015..11224039 (25 bp)
GTCAACATATGGTGCAAGTCTATAA
LOC_Os10g22350
OsAffx.30498.1.S1_at--218--5211Chr10:11223974..11223998 (25 bp)
GAATTCCCTTTCAATTGCCATTGAG
LOC_Os10g22350
OsAffx.30498.1.S1_at--10--2391Chr10:11223923..11223947 (25 bp)
AAACGATGCGCGCACTCTGTCAGTG
LOC_Os10g22350
Target Sequence 
GGAGAGAGGCTCAGAACAACTTCGGAAGAAATTCCATGGAGTACAAACTGCTGCAAGTCTTGGATCTAGAAGAATGTGAC
GGCTTTATGGATGGCTATCTCGACAGCATTTGTAAGCTGTTACTGCTCAAGTATGTGAGCATTGGGGGAGCTGTTACCAC
ACTTCCAAAGACGATTGCTGGACTAAAACTTTTGGAGACACTTGATTTCAGGAGAAATAAGGTAGAGGTGGTGATAATCT
CAGTCGAAGTACTCGTGCTTCCTAAGTTAATTCATCTCTTTGGAAAGTTTGAACTTCCAGGCAGTGTATCAAATAAAATA
CAAAAAAAAATTGAGCCGGGAAAGAGCAACCTGCAAATTCTGGCAGGATTTATTGCTGCCAATAACCATGGTTTTGTGAA
ACTGATGTGCCATATGAAGAACCTGAGAAAAGTCAACATATGGTGCAAGTCTATAACAAAAGGAAACAAGTTGAATTCCC
TTTCAATTGCCATTGAGAAGTTCATTGAGAATAGCAACGATCCAAACGATGCGCGCACTCTGTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis