Browse Element(s) Details


Os.34107.1.S1_at

Description gb:AK072810.1
DB_XREF= gi:32982833
TID=Os.34107.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutamyl-tRNA synthetase (OJ1003C07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141A17, full insert sequence.
FL= gb:AK072810.1 gb:AK059688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2238011/11glutamyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004818molecular_functionglutamate-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34107.1.S1_at--422--3911Chr10:11250483..11250507 (25 bp)
CTGGCCCTAGGAGACGCAAATATGA
LOC_Os10g22380
Os.34107.1.S1_at--212--10211Chr10:11250414..11250438 (25 bp)
TATTACAGGTGCGATGCCCCTTTTG
LOC_Os10g22380
Os.34107.1.S1_at--763--8731Chr10:11250391..11250415 (25 bp)
TGTCAGATCCTCGAAGCCGGTGGTT
LOC_Os10g22380
Os.34107.1.S1_at--49--5431Chr10:11250379..11250403 (25 bp)
GAAGCCGGTGGTTTTGTTCGCTATC
LOC_Os10g22380
Os.34107.1.S1_at--229--6711Chr10:11250364..11250388 (25 bp)
GTTCGCTATCCCTGATGGTCGACAG
LOC_Os10g22380
Os.34107.1.S1_at--844--9351Chr10:11250346..11250370 (25 bp)
TCGACAGCAGGCCAGTTTGAACTAG
LOC_Os10g22380
Os.34107.1.S1_at--916--8971Chr10:11250271..11250295 (25 bp)
TGAATGCTCTACTGAAACACTCCCA
LOC_Os10g22380
Os.34107.1.S1_at--894--2471Chr10:11250256..11250280 (25 bp)
AACACTCCCATCTCATACTGTAATG
LOC_Os10g22380
Os.34107.1.S1_at--917--4571Chr10:11250207..11250231 (25 bp)
GCGCTAAGTTTTGGTGCACAGTTTA
LOC_Os10g22380
Os.34107.1.S1_at--178--4331Chr10:11249986..11250010 (25 bp)
CCATATTGCTTGACATGCCCTTTTA
LOC_Os10g22380
Os.34107.1.S1_at--240--591Chr10:11249972..11249996 (25 bp)
ATGCCCTTTTATGTTTCCAGTTGTT
LOC_Os10g22380
Target Sequence 
CTGGCCCTAGGAGACGCAAATATGAGGAACCTCCTGCGTGGGGAGGTCATACAGCTTGAGAGGAAAGGCTATTACAGGTG
CGATGCCCCTTTTGTCAGATCCTCGAAGCCGGTGGTTTTGTTCGCTATCCCTGATGGTCGACAGCAGGCCAGTTTGAACT
AGGCGGCATGATTCTGATGAGCTTCTCAAGTCGTTGAGTTGTCAGAGATTCCTGAATGCTCTACTGAAACACTCCCATCT
CATACTGTAATGTCGCTTATGTGTCATGGGTGATTTGCGCTAAGTTTTGGTGCACAGTTTAATGTTTCTCATGCTCCATG
CTCCAGTTATTAANAAGACACAACATTTCTTAGATGGCAACGTGTTAGCTTGGCGATATCATACTGCCAGATACAAGCAT
CTGAATTTTTTGAAGACTAATATCTGATATTGCTTGGCATCTGAANNNNNNNAANANNAANANNGCTCTGGGAAACTGAG
TTGAGGACATTTCTGGTCCATATTGCTTGACATGCCCTTTTATGTTTCCAGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis