Browse Element(s) Details


Os.53211.1.S1_at

Description gb:AK071370.1
DB_XREF= gi:32981393
TID=Os.53211.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023094J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094J07, full insert sequence.
FL= gb:AK071370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g224105/11hypothetical protein
LOC_Os07g087001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53211.1.S1_at--92--2011Chr10:11265719..11265743 (25 bp)
ACTCACCCATTCATCGTACGTATTA
LOC_Os10g22410
Os.53211.1.S1_at--830--5191Chr10:11265689..11265713 (25 bp)
GCAATAACTTTGTTCTGGCATCAAT
LOC_Os10g22410
Os.53211.1.S1_at--566--8271Chr10:11265673..11265697 (25 bp)
GGCATCAATACAGCTCATTTACCAT
LOC_Os10g22410
Os.53211.1.S1_at--406--6271Chr10:11265640..11265664 (25 bp)
GATGTGACAGTCTTCAGCTCTTAAC
LOC_Os10g22410
Os.53211.1.S1_at--547--10492Chr07:4476156..4476181 (24 bp)
TTAACACTGCTTCATTTGTCACCTC
LOC_Os07g08700
Os.53211.1.S1_at--1116--2331Chr10:11265456..11265480 (25 bp)
AAAGACTGGCGCCATGGAACTCATC
NONE
Os.53211.1.S1_at--552--8171Chr10:11265441..11265465 (25 bp)
GGAACTCATCAACCTGTATGTATGT
NONE
Os.53211.1.S1_at--845--1231Chr10:11265340..11265364 (25 bp)
AGTTGCTCATGCAGTACTAGACCCC
NONE
Os.53211.1.S1_at--416--5331Chr10:11265256..11265280 (25 bp)
GAAGTAGAGCATCACTGTCTTTTTG
NONE
Os.53211.1.S1_at--145--5131Chr10:11265229..11265253 (25 bp)
GCAAATTCTGGCACTTCGGTGGTAA
NONE
Os.53211.1.S1_at--396--151Chr10:11265160..11265184 (25 bp)
ATTAGTGCTTTTGGCCACTCATGGC
NONE
Target Sequence 
ACTCACCCATTCATCGTACGTATTAGCAATGCAATAACTTTGTTCTGGCATCAATACAGCTCATTTACCATATTATCTCG
ATGTGACAGTCTTCAGCTCTTAACACTGCTTCATTTGTCACCTCATTGTTTTATTTTCTCTTTTTGGATTGTTAATTTGC
ACCTATAATGCTCTACAGGAGAAAGCATACGAAGAGAGCGAGAAGTACAAGGAAGGCAAGTTCATCCTGGAGAAGGCCAG
GATGTGGAAAGAAGCCCGGTGAAAAAGACTGGCGCCATGGAACTCATCAACCTGTATGTATGTATTTTGTGTAGATCCAA
AACAATTCAAAGATTGTAACAACAACTTTGGCGGCGATCAAAGTTTGTATGCATGCTGTAGTTGCTCATGCAGTACTAGA
CCCCCTCAAAAGAAGAGATGAAAACAGCTGCGTCTGATTTGGGGGGGACGAAGATTGACAACAGAAGTAGAGCATCACTG
TCTTTTTGATGCAAATTCTGGCACTTCGGTGGTAACGGTTTTAACCGAAAAATGATGAAGTGCCAGAGATTAACATTTGA
TTAGTGCTTTTGGCCACTCATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis