Browse Element(s) Details


OsAffx.18347.1.S1_at

Description gb:NM_196103.1
DB_XREF= gi:37533565
TID=OsAffx.18347.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1003C07.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g224407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18347.1.S1_at--970--7291Chr10:11286421..11286445 (25 bp)
GTGCGCGGCACTAGGGCGATGGAGT
LOC_Os10g22440
OsAffx.18347.1.S1_at--229--7791Chr10:11286355..11286379 (25 bp)
GGTGCGGGCATCGTTTATATAGGCA
LOC_Os10g22440
OsAffx.18347.1.S1_at--604--8271Chr10:11286349..11286373 (25 bp)
GGCATCGTTTATATAGGCACGGAGT
LOC_Os10g22440
OsAffx.18347.1.S1_at--687--131Chr10:11286339..11286363 (25 bp)
ATATAGGCACGGAGTGGTCGGACGT
LOC_Os10g22440
OsAffx.18347.1.S1_at--851--1331Chr10:11286257..11286281 (25 bp)
AGAGAGGCCGGCTTCGAATCTCGGC
LOC_Os10g22440
OsAffx.18347.1.S1_at--223--5231Chr10:11286242..11286266 (25 bp)
GAATCTCGGCCAGCTCGGGCACGAG
LOC_Os10g22440
OsAffx.18347.1.S1_at--673--3471Chr10:11286168..11286192 (25 bp)
CAGGGTGTGGGCGACGTGCACGGGA
LOC_Os10g22440
OsAffx.18347.1.S1_at--428--5171NONE
GACGGGCCCGACAGGATTTATCGGC
NONE
OsAffx.18347.1.S1_at--986--8391NONE
GGCCCGACAGGATTTATCGGCCCAG
NONE
OsAffx.18347.1.S1_at--491--6535Chr10:11282487..11282511 (25 bp)
GATTTATCGGCCCAGTCTTTGAAGA
NONE
OsAffx.18347.1.S1_at--728--10153Chr10:11282483..11282507 (25 bp)
TATCGGCCCAGTCTTTGAAGATGTT
NONE
Target Sequence 
GTGCGCGGCACTAGGGCGATGGAGTGCACGGGAGAGCTCGGNNNGNGANNGGANNNNNNNGAAGGAGGTGCGGGCATCGT
TTATATAGGCACGGAGTGGTCGGACGTGGCCGGGAACGGGCCGATTTCGCCGGGGATGTGGGGGAGGTGGACAGAGAGAG
AGAGAGAGAGGCCGGCTTCGAATCTCGGCCAGCTCGGGCACGAGCGCGGGCGGAGAAGTGGGGCGGCGGTTGCAGGGGAG
TGCGGGGCGCGTGCAGGGTGTGGGCGACGTGCACGGGAGGCGCGGGAGAGGCGGGAGGCGGCGGTTGTGGGCGCGGGCAG
CGCTGGCCGGAGGAGGGAGACGGGCCCGACAGGATTTATCGGCCCAGTCTTTGAAGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis