Browse Element(s) Details


Os.9613.1.S1_at

Description gb:AK069323.1
DB_XREF= gi:32979347
TID=Os.9613.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Myo-inositol-1-phosphate synthase (MI-1-P synthase) (OJ1003C07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016I07, full insert sequence.
FL= gb:AK100872.1 gb:AK069323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g224507/11Inositol-3-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006021biological_processmyo-inositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0004512molecular_functioninositol-3-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9613.1.S1_at--790--8411Chr10:11297635..11297659 (25 bp)
GGCCCCTGAGAACAACATGATGCTT
LOC_Os10g22450
Os.9613.1.S1_at--264--811Chr10:11297855..11297879 (25 bp)
ATGGGTGTCATTCACTTGGATCCTC
LOC_Os10g22450
Os.9613.1.S1_at--621--131Chr10:11297864..11297888 (25 bp)
ATTCACTTGGATCCTCTTAATTGGG
LOC_Os10g22450
Os.9613.1.S1_at--745--2131Chr10:11297900..11297924 (25 bp)
ACAGTTTGACACTCTGCTCCATGAT
LOC_Os10g22450
Os.9613.1.S1_at--295--6031Chr10:11297954..11297978 (25 bp)
GAGATGGAGACTTTTTTCAGCTCTG
LOC_Os10g22450
Os.9613.1.S1_at--774--8171Chr10:11298043..11298067 (25 bp)
GGAACTAATCGTCTTCTATGCTTAT
LOC_Os10g22450
Os.9613.1.S1_at--483--7151Chr10:11298103..11298123 (21 bp)
GTCTTATATCTGGAACACTTTGTGA
LOC_Os10g22450
Os.9613.1.S1_at--192--7571NONE
GGGTCCTAGTCGTGGTATTTATGAG
NONE
Os.9613.1.S1_at--277--3471NONE
CAGTGGTTCTGGTTATCAAAATGCA
NONE
Os.9613.1.S1_at--578--3011NONE
AATGCAGCAATTTCCGTGGTTATTA
NONE
Os.9613.1.S1_at--390--10571NONE
TTCCGTGGTTATTATCCGTGGTAAT
NONE
Target Sequence 
GGCCCCTGAGAACAACATGATGCTTGAGTACAAGTGATATAGGCCTTGACAGGTCCTCTTATCAGGAGGGATGATGAACA
GCAAGTGGTGGAGGAAGGTGACAGTTTTCTTCAACAAGAAAAANAANAAAAAAAGAGAGAAAATGAGGAACACCTGAAAG
AAATAACAAGAGGCCAAGTGGGGAAGCAAATGAAATGATCAAGTGATATTCATTCAGAAAATGGGTGTCATTCACTTGGA
TCCTCTTAATTGGGGGCATCTATTGACAGTTTGACACTCTGCTCCATGATTTTTTTTTTNNTTTTTTNTTTTTTTAATTG
AGATGGAGACTTTTTTCAGCTCTGNTGNTAGTATGCTGTGAGCTGCNATGAACATTGGTTAATATTGNGNTATGATGATA
GGTGAAGCNAAGGAACTAATCGTCTTCTATGCTTATGGATCTATAGTACAAGTTGTCAGTATTACTGTTAAGTCTTATAT
CTGGAACACTTTGTGAATCAAAGAACAGCTTGGGGTCCTAGTCGTGGTATTTATGAGGCCAGTGGTTCTGGTTATCAAAA
TGCAGCAATTTCCGTGGTTATTATCCGTGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis