Browse Element(s) Details


Os.46691.1.A1_x_at

Description gb:CB683781
DB_XREF= gi:29687506
DB_XREF=OSJNEf12K05.r
CLONE=OSJNEf12K05
TID=Os.46691.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C (OJ1003C07.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2246011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46691.1.A1_x_at--1064--10331Chr10:11298969..11298993 (25 bp)
TTTACAAGCCGATCTCAAACCAACG
LOC_Os10g22460
Os.46691.1.A1_x_at--679--1251Chr10:11298864..11298888 (25 bp)
AGATTGCTGAACACCTGGCTGCCAA
LOC_Os10g22460
Os.46691.1.A1_x_at--888--5331Chr10:11298832..11298856 (25 bp)
GAAGTTGGTAGATCTGCAGCCGGAA
LOC_Os10g22460
Os.46691.1.A1_x_at--910--8191Chr10:11298811..11298835 (25 bp)
GGAAGTACCCCATTCTCAGATGCCG
LOC_Os10g22460
Os.46691.1.A1_x_at--96--2551Chr10:11298750..11298774 (25 bp)
AACTCGATGACATAGCCGTCGTCGT
LOC_Os10g22460
Os.46691.1.A1_x_at--879--4011Chr10:11298734..11298758 (25 bp)
CGTCGTCGTGTCCATTGTCAGGAAA
LOC_Os10g22460
Os.46691.1.A1_x_at--962--1191Chr10:11298657..11298681 (25 bp)
AGTTTGGTTGAAGCTGCACTCCTAG
LOC_Os10g22460
Os.46691.1.A1_x_at--766--7771Chr10:11298621..11298645 (25 bp)
GGTGCACCACACTCATCAATATATT
LOC_Os10g22460
Os.46691.1.A1_x_at--640--8431Chr10:11298542..11298566 (25 bp)
GGCCATTAACCTGTGTAAGTATCTT
LOC_Os10g22460
Os.46691.1.A1_x_at--1007--3151Chr10:11298510..11298534 (25 bp)
AATTGCTCGCGGTTTTTGGGCTAAT
LOC_Os10g22460
Os.46691.1.A1_x_at--635--2271Chr10:11298430..11298454 (25 bp)
AAATCTGCCGTGTGTGTGAGAGACA
LOC_Os10g22460
Target Sequence 
TTTACAAGCCGATCTCAAACCAACGGAGATTGCTGAACACCTGGCTGCCAAGGCGCAGGAAGTTGGTAGATCTGCAGCCG
GAAGTACCCCATTCTCAGATGCCGCTCTTGCAGTGGGGTACCTGGGTTTCAGCGGGGGCAAACTCGATGACATAGCCGTC
GTCGTGTCCATTGTCAGGAAATCTGAAATCTAAATTGTAAAAGACATCCATGATCCATGATGTCCCCCTCTCAAGTTTGG
TTGAAGCTGCACTCCTAGCCTCCTAGCAAGGTGCACCACACTCATCAATATATTGTACAACCAGAAGTGCAGCTGCTGAA
AAAGACTATCTGTGAGCGAGGAGCAAGAGGCCATTAACCTGTGTAAGTATCTTTGAGCCGAATTGCTCGCGGTTTTTGGG
CTAATTTAGCATTGGAAAGTAATATTGTGATCCTTGGNTCGAGTTGTAAACCGGTGGAAGAAATCTGCCGTGTGTGTGAG
AGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46691.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis