Browse Element(s) Details


Os.11601.1.S1_at

Description gb:AK100049.1
DB_XREF= gi:32985258
TID=Os.11601.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155A10, full insert sequence.
FL= gb:AK100049.1 gb:AK071987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2246010/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11601.1.S1_at--486--5491Chr10:11298389..11298413 (25 bp)
GAACATACATTGATTATGTGACATG
LOC_Os10g22460
Os.11601.1.S1_at--980--3751Chr10:11298310..11298334 (25 bp)
CTCATTTCACATTAACCTGATGTTT
LOC_Os10g22460
Os.11601.1.S1_at--376--3571Chr10:11298301..11298325 (25 bp)
CATTAACCTGATGTTTACCCATGGA
LOC_Os10g22460
Os.11601.1.S1_at--119--9811Chr10:11298298..11298322 (25 bp)
TAACCTGATGTTTACCCATGGATGC
LOC_Os10g22460
Os.11601.1.S1_at--81--1771Chr10:11298296..11298320 (25 bp)
ACCTGATGTTTACCCATGGATGCCA
LOC_Os10g22460
Os.11601.1.S1_at--602--8871Chr10:11298293..11298317 (25 bp)
TGATGTTTACCCATGGATGCCAAGA
LOC_Os10g22460
Os.11601.1.S1_at--330--6831Chr10:11298289..11298313 (25 bp)
GTTTACCCATGGATGCCAAGATGTT
LOC_Os10g22460
Os.11601.1.S1_at--968--10451Chr10:11298287..11298311 (25 bp)
TTACCCATGGATGCCAAGATGTTTT
LOC_Os10g22460
Os.11601.1.S1_at--700--7971Chr10:11298279..11298303 (25 bp)
GGATGCCAAGATGTTTTAGCCATTA
LOC_Os10g22460
Os.11601.1.S1_at--435--4391Chr10:11298275..11298299 (25 bp)
GCCAAGATGTTTTAGCCATTAGTAC
LOC_Os10g22460
Os.11601.1.S1_at--791--1291Chr10:11298271..11298295 (25 bp)
AGATGTTTTAGCCATTAGTACAGAA
NONE
Target Sequence 
GAACATACATTGATTATGTGACATGAACTGGAAATTGCCGCAAGACACCTCCTGGCACTGGCAACTGTAACCATCACACC
TCATTTCACATTAACCTGATGTTTACCCATGGATGCCAAGATGTTTTAGCCATTAGTACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis