Browse Element(s) Details


Os.22472.1.S1_x_at

Description gb:AK058352.1
DB_XREF= gi:32968370
TID=Os.22472.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SCARECROW gene regulator-like (OJ1003C07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E08, full insert sequence.
FL= gb:AK058352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2243011/11Chitin-inducible gibberellin-responsive protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22472.1.S1_x_at--344--811Chr10:11274415..11274439 (25 bp)
ATGGTGTTCTTTACCTTGGATGGAA
LOC_Os10g22430
Os.22472.1.S1_x_at--1095--5371Chr10:11274223..11274367 (25 bp)
GAAGAAGAAGCTCATGTCCCATCAC
LOC_Os10g22430
Os.22472.1.S1_x_at--1009--2471Chr10:11274166..11274190 (25 bp)
AACACGAGCTTTGCTTTGCAGTGGT
LOC_Os10g22430
Os.22472.1.S1_x_at--230--2571Chr10:11274122..11274146 (25 bp)
AACTGTGGATATCTCTAGTCCTCAA
LOC_Os10g22430
Os.22472.1.S1_x_at--367--9671Chr10:11274085..11274109 (25 bp)
TCACCATCCATCTAATTCAACGCTT
LOC_Os10g22430
Os.22472.1.S1_x_at--1008--6471Chr10:11274046..11274070 (25 bp)
GATACTCAACATCAGCTGGTGCGAC
LOC_Os10g22430
Os.22472.1.S1_x_at--343--3831Chr10:11274004..11274028 (25 bp)
CGTAACCTTGTTCTATCCATGCTAA
LOC_Os10g22430
Os.22472.1.S1_x_at--369--5251Chr10:11273964..11273988 (25 bp)
GAATCTGGTATTGCATCCAAGGCTG
LOC_Os10g22430
Os.22472.1.S1_x_at--1061--6331Chr10:11273939..11273963 (25 bp)
GATGCTCTTGCTCTTAGGTTTGACA
LOC_Os10g22430
Os.22472.1.S1_x_at--236--7391Chr10:11273900..11273924 (25 bp)
GTGATCAAGCTAGACAGGCCCAAGT
LOC_Os10g22430
Os.22472.1.S1_x_at--541--4551Chr10:11273883..11273907 (25 bp)
GCCCAAGTTGGCTGCTAGTTTTCTA
LOC_Os10g22430
Target Sequence 
ATGGTGTTCTTTACCTTGGATGGAAGAACAGAGTATTGGTTGTATCTTCTGCATGGTGTTGACATGTCTTTGGAAGAAGA
AGCTCATGTCCCATCACATCTCCATCTCCAGCTTGCAGGTGCAAGATGTAACACGAGCTTTGCTTTGCAGTGGTGTAGAA
TAATGCAAACTATAACTGTGGATATCTCTAGTCCTCAATTCTCCCCATGCTCACCATCCATCTAATTCAACGCTTATCTG
ATCATCTGAGATACTCAACATCAGCTGGTGCGACAATCGTAGCATAGAAGTCGTAACCTTGTTCTATCCATGCTAAATAT
GTATAATATAGGAATCTGGTATTGCATCCAAGGCTGGATGCTCTTGCTCTTAGGTTTGACATGTTGTAATGTTCAGTGAT
CAAGCTAGACAGGCCCAAGTTGGCTGCTAGTTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22472.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis