Browse Element(s) Details


OsAffx.26001.1.S1_s_at

Description gb:NM_196099.1
DB_XREF= gi:37533557
TID=OsAffx.26001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1003C07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2239411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26001.1.S1_s_at--167--8711Chr10:11263176..11263200 (25 bp)
TGTCCAATCTTACACTCACAACATT
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--1112--8631Chr10:11263252..11263276 (25 bp)
TGGGAGGAGATTCGCCTCACATCTT
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--735--9271Chr10:11263281..11263305 (25 bp)
TCCTGAGTGGAGTCTTGGCTATGCT
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--561--3611Chr10:11263294..11263318 (25 bp)
CTTGGCTATGCTCCCATATTGATGA
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--806--7071Chr10:11263333..11263357 (25 bp)
GTCACCAAACTTCGATTCTACAAGG
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--309--6151Chr10:11263357..11263381 (25 bp)
GAGGTGCACCACACTGGACTCAAAG
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--872--6191Chr10:11263383..11263407 (25 bp)
GAGGCTAGAGAAACCCATGACCACT
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--852--10071Chr10:11263410..11263434 (25 bp)
TAGGAGGCCAAGGTCTACCACTAAA
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--941--4191Chr10:11263590..11263614 (25 bp)
CCCGATGGCTCCGAGGTCAATGAAA
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--604--1451Chr10:11263622..11263646 (25 bp)
AGAAGTGTTCGATGATCCCTTTGCC
LOC_Os10g22394
OsAffx.26001.1.S1_s_at--178--551Chr10:11263636..11263660 (25 bp)
ATCCCTTTGCCGACGAAGCTAGTAG
LOC_Os10g22394
Target Sequence 
TGTCCAATCTTACACTCACAACATTCTTGCAAGGATGAGGGCTTCTCCGAAGAAATTTGATGTGTTTGAGTTCATTTGGG
AGGAGATTCGCCTCACATCTTTCACTCCTGAGTGGAGTCTTGGCTATGCTCCCATATTGATGAAAATGATTGAGCAAGTC
ACCAAACTTCGATTCTACAAGGAGGTGCACCACACTGGACTCAAAGTGAGGCTAGAGAAACCCATGACCACTCCTAGGAG
GCCAAGGTCTACCACTAAAGCTGCACGTACTCAAGCTCCCTCCACTCCGACTCTCTCTTCTTCACTGTTGTGGAAAATTC
TCAAGTCTATCTATAATGTGTGCAAGTCCAACGCCATCGAAGCCAGGAAGGGGCGAGCGGAATTGAAGAAGCAGACTACA
AATTTCCTTGCTCCCCCGATGGCTCCGAGGTCAATGAAAGTGATGAAGAAGTGTTCGATGATCCCTTTGCCGACGAAGCT
AGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26001.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis