Browse Element(s) Details


OsAffx.26001.3.S1_x_at

Description tigr:9638.m01889
TID=OsAffx.26001.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g223949/11hypothetical protein
LOC_Os02g433402/11Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os08g105501/11Potassium transporter 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22356NANA10+11235548..11235811hypothetical protein
LOC_Os10g22362NANA10+11236919..11237524hypothetical protein
LOC_Os10g22370Os.46601.1.S1_at11/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22370Os.21103.1.S1_x_at1/1110+11239618..11245185pentatricopeptide, putative, expressed
LOC_Os10g22380Os.34107.1.S1_at11/1110+11249926..11253896glutamyl-tRNA synthetase family protein, expressed
LOC_Os10g22394OsAffx.26001.1.S1_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.1.S1_s_at11/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22394OsAffx.26001.3.S1_x_at9/1110+11257370..11263743hypothetical protein
LOC_Os10g22410Os.53211.1.S1_at5/1110+11265482..11268344hypothetical protein
LOC_Os10g22430Os.22472.2.S1_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22430Os.22472.1.S1_x_at11/1110+11273734..11277575Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os10g22440OsAffx.18347.1.S1_at7/1110+11285705..11286538hypothetical protein
LOC_Os10g22440OsAffx.1956.1.S1_at1/1110+11285705..11286538hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003824molecular_functioncatalytic activity
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
GO:0015079molecular_functionpotassium ion transporter activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26001.3.S1_x_at--480--7111NONE
GTCAGCGCTCGGTTAGTGCAGAGAT
NONE
OsAffx.26001.3.S1_x_at--39--9411NONE
TCGGTTAGTGCAGAGATTAGCCAAT
NONE
OsAffx.26001.3.S1_x_at--824--1251Chr10:11258671..11258695 (25 bp)
AGATTAGCCAATCTGCAGGTTGCAA
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--596--5011Chr10:11258685..11258709 (25 bp)
GCAGGTTGCAATCCAAGTTCCGACA
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--202--551Chr10:11258695..11258717 (23 bp)
ATCCAAGTTCCGACAGAAGGACGAA
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--408--836Chr10:11259159..11259183 (25 bp)
ATGGATTAAAATCTGGCCTCTACAT
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--30--9476Chr10:11259170..11259194 (25 bp)
TCTGGCCTCTACATCCACAATGGAT
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--1084--2952Chr10:11259188..11259212 (25 bp)
AATGGATGTACACAGCCCTCAAGGA
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--337--1671Chr10:11259201..11259225 (25 bp)
AGCCCTCAAGGAAATACTACTGTAT
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--869--6911Chr10:11259285..11259760 (25 bp)
GTATGATGAACAGACTTGCAGTGAT
LOC_Os10g22394
OsAffx.26001.3.S1_x_at--316--6311Chr10:11259758..11259782 (25 bp)
GATGAGCTAGATATCAAGGCAAACA
LOC_Os10g22394
Target Sequence 
GTCAGCGCTCGGTTAGTGCAGAGATTAGCCAATCTGCAGGTTGCAATCCAAGTTCCGACAGAAGGACGAAAATGGATTAA
AATCTGGCCTCTACATCCACAATGGATGTACACAGCCCTCAAGGAAATACTACTGTATCGAGACAATATGATAAATGAGA
TGTGTACCAGAATACAAAGTTATCGTGTTACTAGTAAGTATGATGAACAGACTTGCAGTGATGAGCTAGATATCAAGGCA
AACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26001.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis