Browse Element(s) Details


Os.7185.2.S1_a_at

Description gb:AK066788.1
DB_XREF= gi:32976806
TID=Os.7185.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OJ1003C07.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087A12, full insert sequence.
FL= gb:AK100740.1 gb:AK066788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2248411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22450Os.9613.1.S1_at7/1110+11293008..11298218Inositol-3-phosphate synthase, putative, expressed
LOC_Os10g22460Os.46691.1.A1_x_at11/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22460Os.11601.1.S1_at10/1110+11298273..11303102Protein phosphatase 2C containing protein, expressed
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7185.2.S1_a_at--839--7931Chr10:11318969..11318993 (25 bp)
GGATTTGCAATCAGCCGTACTGAGG
LOC_Os10g22484
Os.7185.2.S1_a_at--1025--3071Chr10:11318855..11318985 (25 bp)
AATCAGCCGTACTGAGGAGGGTTTT
LOC_Os10g22484
Os.7185.2.S1_a_at--632--10411Chr10:11318832..11318856 (25 bp)
TTATCTACATATCTTCAGTGTTGCA
LOC_Os10g22484
Os.7185.2.S1_a_at--728--6311Chr10:11318806..11318830 (25 bp)
GATGACAATGACAGCGAGACACCGT
LOC_Os10g22484
Os.7185.2.S1_a_at--998--8931Chr10:11318798..11318822 (25 bp)
TGACAGCGAGACACCGTCAACACGG
LOC_Os10g22484
Os.7185.2.S1_a_at--882--4071Chr10:11318792..11318816 (25 bp)
CGAGACACCGTCAACACGGTCAGGG
LOC_Os10g22484
Os.7185.2.S1_a_at--590--2471Chr10:11318780..11318804 (25 bp)
AACACGGTCAGGGATGCACAATCTG
LOC_Os10g22484
Os.7185.2.S1_a_at--139--7991Chr10:11318769..11318793 (25 bp)
GGATGCACAATCTGTTCAACCGGGC
LOC_Os10g22484
Os.7185.2.S1_a_at--619--5111Chr10:11318765..11318789 (25 bp)
GCACAATCTGTTCAACCGGGCAAGA
LOC_Os10g22484
Os.7185.2.S1_a_at--129--1791Chr10:11318751..11318775 (25 bp)
ACCGGGCAAGAGAGGCATCGAAATT
LOC_Os10g22484
Os.7185.2.S1_a_at--850--4091Chr10:11318733..11318757 (25 bp)
CGAAATTGCTGGTCATCTCAAGGGT
LOC_Os10g22484
Target Sequence 
GGATTTGCAATCAGCCGTACTGAGGAGGGTTTTATCTACATATCTTCAGTGTTGCAAGATGACAATGACAGCGAGACACC
GTCAACACGGTCAGGGATGCACAATCTGTTCAACCGGGCAAGAGAGGCATCGAAATTGCTGGTCATCTCAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7185.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis