Browse Element(s) Details


Os.7314.1.S1_at

Description gb:AK065000.1
DB_XREF= gi:32975018
TID=Os.7314.1
CNT=58
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.7314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Glucan 1,3-beta-glucosidase precursor (OJ1003C07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E03, full insert sequence.
FL= gb:AK065000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2252011/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7314.1.S1_at--293--9671Chr10:11336307..11336331 (25 bp)
TCACCGTCGACCAGAACATCGACTA
LOC_Os10g22520
Os.7314.1.S1_at--24--5491Chr10:11336294..11336318 (25 bp)
GAACATCGACTACGTCAGGACCAAC
LOC_Os10g22520
Os.7314.1.S1_at--447--1491Chr10:11336254..11336278 (25 bp)
AGCACCGTCACAAGGCCGAATGGGC
LOC_Os10g22520
Os.7314.1.S1_at--1104--5271Chr10:11336238..11336261 (24 bp)
GAATGGGCCGCTGACGTTCGTGGGA
LOC_Os10g22520
Os.7314.1.S1_at--7--7331Chr10:11335797..11335821 (25 bp)
GTGCAGGGAGCATCTAACCAGGATT
LOC_Os10g22520
Os.7314.1.S1_at--567--8071Chr10:11335791..11335815 (25 bp)
GGAGCATCTAACCAGGATTATCAGA
LOC_Os10g22520
Os.7314.1.S1_at--800--392Chr10:11335772..11335796 (25 bp)
ATCAGAGGTTTGCACAAGCCCAGCT
LOC_Os10g22520
Os.7314.1.S1_at--1103--2651Chr10:11335757..11335781 (25 bp)
AAGCCCAGCTAGATGTTTATGGACG
LOC_Os10g22520
Os.7314.1.S1_at--1050--1251Chr10:11335747..11335771 (25 bp)
AGATGTTTATGGACGAGCTACCTTC
LOC_Os10g22520
Os.7314.1.S1_at--97--6271Chr10:11335721..11335745 (25 bp)
GATGGGCCTATTGGACTTACAAGAA
LOC_Os10g22520
Os.7314.1.S1_at--460--8131Chr10:11335709..11335733 (25 bp)
GGACTTACAAGAACGTCAACAACCA
LOC_Os10g22520
Target Sequence 
TCACCGTCGACCAGAACATCGACTACGTCAGGACCAACCGCTCCGACGAACTCAGCACCGTCACAAGGCCGAATGGGCCG
CTGACGTTCGTGGGAGAGTGGGTGGCTGAGTGGAATGTGCAGGGAGCATCTAACCAGGATTATCAGAGGTTTGCACAAGC
CCAGCTAGATGTTTATGGACGAGCTACCTTCGGATGGGCCTATTGGACTTACAAGAACGTCAACAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis