Browse Element(s) Details


OsAffx.20993.1.S1_at

Description gb:XM_354078.1
DB_XREF= gi:35189589
TID=OsAffx.20993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g388101/11hypothetical protein
LOC_Os10g225201/11Cellulase containing protein, expressed
LOC_Os05g408801/11hypothetical protein
LOC_Os10g311801/11hypothetical protein
LOC_Os08g130801/11retrotransposon protein, putative, unclassified
LOC_Os02g272101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38770NANA6+23015239..23016255expressed protein
LOC_Os06g38780OsAffx.27996.1.S1_at4/116+23016864..23019935Leucine Rich Repeat family protein, expressed
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed
LOC_Os06g38840OsAffx.15826.1.S1_at2/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840Os.46459.1.S1_at1/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850OsAffx.27999.1.S1_at11/116+23056312..23056587hypothetical protein
LOC_Os06g38870OsAffx.15826.1.S1_at9/116+23065612..23067154hypothetical protein
LOC_Os06g38870Os.19061.2.S1_at1/116+23065612..23067154hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20993.1.S1_at--832--2531Chr07:1704205..1704229 (25 bp)
GAATCGAAGGCGAGTAGTAACCTGT
NONE
OsAffx.20993.1.S1_at--614--1171Chr07:1704190..1704214 (25 bp)
AGTAACCTGTGATTGCTCTAGCAAA
NONE
OsAffx.20993.1.S1_at--585--71Chr07:1704179..1704203 (25 bp)
ATTGCTCTAGCAAACCATACTCTGA
NONE
OsAffx.20993.1.S1_at--1021--5371Chr07:1704144..1704168 (25 bp)
GAAGCAGCCGCTAGAGTAACATTAC
NONE
OsAffx.20993.1.S1_at--536--9811Chr07:1704128..1704152 (25 bp)
TAACATTACGCCATTACCTAGGGAT
NONE
OsAffx.20993.1.S1_at--1082--8171Chr07:1704103..1704127 (25 bp)
GGAAGAAACAGATCCTGCGAGAGGA
NONE
OsAffx.20993.1.S1_at--732--6011Chr07:1704085..1704109 (25 bp)
GAGAGGAAGATATAGCCGCCAGTTT
NONE
OsAffx.20993.1.S1_at--545--10171NONE
TATAGCCGCCAGTTTTCTAAGTGCC
NONE
OsAffx.20993.1.S1_at--79--4431NONE
GCCAGTTTTCTAAGTGCCTGTTTGG
NONE
OsAffx.20993.1.S1_at--250--27128Chr12:4454186..4454210 (25 bp)
AAGCTAGCTGGTGAGAATCTGGAGA
NONE
OsAffx.20993.1.S1_at--73--8071Chr07:1699798..1700269 (25 bp)
GGAGAAGCTGGTTGGTTTTGATAAA
NONE
Target Sequence 
GAATCGAAGGCGAGTAGTAACCTGTGATTGCTCTAGCAAACCATACTCTGAAGAAAGGAAGGAAGCAGCCGCTAGAGTAA
CATTACGCCATTACCTAGGGATGGAAGAAACAGATCCTGCGAGAGGAAGATATAGCCGCCAGTTTTCTAAGTGCCTGTTT
GGGGAGTTTAAAATTCTGAGAAGCAGCGAGAAGCTAGCTGGTGAGAATCTGGAGAAGCTGGTTGGTTTTGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis