Browse Element(s) Details


OsAffx.5052.1.S1_at

Description tigr:9634.m03703
TID=OsAffx.5052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3880011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38760OsAffx.27995.1.S1_at11/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38760Os.27322.1.S1_x_at1/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38770NANA6+23015239..23016255expressed protein
LOC_Os06g38780OsAffx.27996.1.S1_at4/116+23016864..23019935Leucine Rich Repeat family protein, expressed
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed
LOC_Os06g38840OsAffx.15826.1.S1_at2/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840Os.46459.1.S1_at1/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850OsAffx.27999.1.S1_at11/116+23056312..23056587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5052.1.S1_at--566--10611Chr06:23033147..23033171 (25 bp)
TTCTGGAGAGCCCATTCACGAAGGT
LOC_Os06g38800
OsAffx.5052.1.S1_at--731--5871Chr06:23033140..23033164 (25 bp)
GAGCCCATTCACGAAGGTCCTGAGA
LOC_Os06g38800
OsAffx.5052.1.S1_at--586--1031Chr06:23033126..23033150 (25 bp)
AGGTCCTGAGAAACCCATTGAGCCC
LOC_Os06g38800
OsAffx.5052.1.S1_at--689--471Chr06:23033082..23033106 (25 bp)
ATCTCCACGCCGCTGTGACAGAGAA
LOC_Os06g38800
OsAffx.5052.1.S1_at--1094--531Chr06:23033050..23033074 (25 bp)
ATCGCCGGCGACGTACATGACAAAG
LOC_Os06g38800
OsAffx.5052.1.S1_at--513--3511Chr06:23033035..23033059 (25 bp)
CATGACAAAGTCACCAGCTCTAAGG
LOC_Os06g38800
OsAffx.5052.1.S1_at--325--1171Chr06:23033027..23033051 (25 bp)
AGTCACCAGCTCTAAGGACGATCCT
LOC_Os06g38800
OsAffx.5052.1.S1_at--43--1591Chr06:23033020..23033044 (25 bp)
AGCTCTAAGGACGATCCTTCTCATA
LOC_Os06g38800
OsAffx.5052.1.S1_at--22--9251Chr06:23033006..23033030 (25 bp)
TCCTTCTCATACTCGTCCGGTAGAA
LOC_Os06g38800
OsAffx.5052.1.S1_at--1083--1991Chr06:23032996..23033020 (25 bp)
ACTCGTCCGGTAGAAGAGGATGGAA
LOC_Os06g38800
OsAffx.5052.1.S1_at--619--971Chr06:23032980..23033004 (25 bp)
AGGATGGAAGCTCCGGTCGTGGTCT
LOC_Os06g38800
Target Sequence 
TTCTGGAGAGCCCATTCACGAAGGTCCTGAGAAACCCATTGAGCCCCCAGGCCCGCCCTCGCACAATCTCCACGCCGCTG
TGACAGAGAATGAAGGCATCGCCGGCGACGTACATGACAAAGTCACCAGCTCTAAGGACGATCCTTCTCATACTCGTCCG
GTAGAAGAGGATGGAAGCTCCGGTCGTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis