Browse Element(s) Details


Os.27322.1.S1_x_at

Description gb:AK063441.1
DB_XREF= gi:32973459
TID=Os.27322.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.6 (P0042A10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E12, full insert sequence.
FL= gb:AK063441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5264011/11WD-40 repeat family protein, putative, expressed
LOC_Os06g387601/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009585biological_processred, far-red light phototransduction
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27322.1.S1_x_at--564--8271Chr01:30587058..30587082 (25 bp)
GGCAGTGTGGAAACTTCTCATTTGA
LOC_Os01g52640
Os.27322.1.S1_x_at--980--3391Chr01:30587137..30587161 (25 bp)
CAGAAAACGTTTCCGACCTGAGCTA
LOC_Os01g52640
Os.27322.1.S1_x_at--556--8171Chr01:30587210..30587234 (25 bp)
GGAACAGTTCCATCATCTGTGCTGA
LOC_Os01g52640
Os.27322.1.S1_x_at--467--2871Chr01:30587242..30587266 (25 bp)
AAGTGTGTTGTCTAAAAGCTCCAGA
LOC_Os01g52640
Os.27322.1.S1_x_at--106--1551Chr01:30587296..30587320 (25 bp)
AGCATACTTTCTCACAAGATCCAAG
LOC_Os01g52640
Os.27322.1.S1_x_at--251--9791Chr01:30587346..30587370 (25 bp)
TAAGCAGTTGCCATCAAGTCGTGAA
LOC_Os01g52640
Os.27322.1.S1_x_at--1139--931Chr01:30587372..30587396 (25 bp)
AGGACTACTGGGTCACCTGTTGTGA
LOC_Os01g52640
Os.27322.1.S1_x_at--1020--7951Chr01:30587460..30587484 (25 bp)
GGATGAACTCTTTTCTTGAGGGATT
LOC_Os01g52640
Os.27322.1.S1_x_at--578--6412Chr06:23005370..23005496 (25 bp)
GATCTGCTGAACTCATCAAACTTAG
LOC_Os06g38760
Os.27322.1.S1_x_at--923--10051Chr01:30587562..30587586 (25 bp)
TAGTATGCTCTGTAGGCTTCGACCG
LOC_Os01g52640
Os.27322.1.S1_x_at--429--6071Chr01:30587594..30587618 (25 bp)
GAGTTCTTTGCAACTGCTGGTGTAA
LOC_Os01g52640
Target Sequence 
GGCAGTGTGGAAACTTCTCATTTGAGTTGGATAAAGAGGTGTGCTCTGAAACAGTTGAAGATCAGAGTGATTGTGGATCC
AGAAAACGTTTCCGACCTGAGCTACCAGCTGTTGATATGGAGGAACAGAATCGTAGTCTTGAAGAATGTTCGGGAACAGT
TCCATCATCTGTGCTGATCCAGGAAAGTGTGTTGTCTAAAAGCTCCAGACTGATGAAGAACTTCAAAAAACTTGAAACAG
CATACTTTCTCACAAGATCCAAGTTGGCAAAGCAAGTTGGGAATCCTGTAAGCAGTTGCCATCAAGTCGTGAAAAGGACT
ACTGGGTCACCTGTTGTGACTGAGGGAAGTTCAATAGATGATTTTGCTTTGGAAGGGCATTATGGTACAAGGCAAAGAGG
TTGGATGAACTCTTTTCTTGAGGGATTGTGTAGTTACTTATCGTTCAGTAAGTTGAAAGTTAAGGCAGAACTGAAGCAAT
GTGATCTGCTGAACTCATCAAACTTAGTATGCTCTGTAGGCTTCGACCGGGATAAAGAGTTCTTTGCAACTGCTGGTGTA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27322.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis