Browse Element(s) Details


Os.16429.1.S1_at

Description gb:AK101326.1
DB_XREF= gi:32986535
TID=Os.16429.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.5 (P0042A10.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034G02, full insert sequence.
FL= gb:AK101326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g526309/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52570OsAffx.2316.1.S1_at11/111+30552686..30553354Lachrymatory-factor synthase precursor, putative, expressed
LOC_Os01g52579OsAffx.23765.1.S1_at2/111+30554956..30555830NA
LOC_Os01g52590OsAffx.23765.1.S1_at7/111+30556825..30557265hypothetical protein
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16429.1.S1_at--126--1771Chr01:30581259..30581283 (25 bp)
ACCGGAATAGCGCTGAGTTGGAACA
LOC_Os01g52630
Os.16429.1.S1_at--1127--5491Chr01:30581279..30581303 (25 bp)
GAACAAAAGCTATCTGCTGCCTCAG
LOC_Os01g52630
Os.16429.1.S1_at--412--1371Chr01:30581305..30581329 (25 bp)
AGAGCTGGAGTTTCTTCGGTCAAAA
LOC_Os01g52630
Os.16429.1.S1_at--183--7031Chr01:30581379..30581403 (25 bp)
GTAAACCTCTAGATGAACGAACACT
LOC_Os01g52630
Os.16429.1.S1_at--708--3331Chr01:30581406..30581430 (25 bp)
CACGTTCCCTTCAAGAATCTCCTGT
LOC_Os01g52630
Os.16429.1.S1_at--679--5251Chr01:30581420..30581444 (25 bp)
GAATCTCCTGTCTTTGATATTAGAA
LOC_Os01g52630
Os.16429.1.S1_at--426--2511Chr01:30581456..30581480 (25 bp)
AACATCTTGGATACAGCAGGTACTG
LOC_Os01g52630
Os.16429.1.S1_at--65--7851Chr01:30581474..30581498 (25 bp)
GGTACTGATGAACTCAATCGCCTGG
LOC_Os01g52630
Os.16429.1.S1_at--1017--2531Chr01:30581484..30581508 (25 bp)
AACTCAATCGCCTGGAGATCTTCTA
LOC_Os01g52630
Os.16429.1.S1_at--592--10411Chr01:30581774..30581798 (25 bp)
TTATCAGTTATGGTCACTCCGTCAT
NONE
Os.16429.1.S1_at--284--1991Chr01:30581789..30581813 (25 bp)
ACTCCGTCATTATGTAGCCTTTCTT
NONE
Target Sequence 
ACCGGAATAGCGCTGAGTTGGAACAAAAGCTATCTGCTGCCTCAGAAGAGCTGGAGTTTCTTCGGTCAAAACTGACACTT
ATGGAGAGATATGCCAACATACTTCACATTTCAATATTTCGTAAACCTCTAGATGAACGAACACTTCCACGTTCCCTTCA
AGAATCTCCTGTCTTTGATATTAGAAAGGAATTTGAGAACATCTTGGATACAGCAGGTACTGATGAACTCAATCGCCTGG
AGATCTTCTACCGCAGCATGCTTTCTGGTGTGAAGGATAAGCTTTTGAAGAGAAGAGTCCAGGAAATGGTCCAAGAGTGC
ATTGTTTCGCTCTCTTCAGGGAGACAAACCCCATGAGGTCAGTAAATTAGATGATTAATCACCAAATTGTAATTCCTGTT
GTGCAGCATCTATCAAATTTTGTGCATTAAAATTGTAATAAGCTCTGATGCTGCCAGCTTGTTGTTTTATCAAAGTTAAA
TTATAATACAAAATAATCTAACCATTTTGGTAAACTTATCAGTTATGGTCACTCCGTCATTATGTAGCCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis