Browse Element(s) Details


OsAffx.18402.1.S1_at

Description tigr:9638.m02195
TID=OsAffx.18402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2585011/11CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os01g526101/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed
LOC_Os10g25840NANA10+13059373..13060839retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016020cellular_componentmembrane
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18402.1.S1_at--803--5571Chr10:13062811..13062835 (25 bp)
GAAAGTGTCAACTGAATTATCCCTA
LOC_Os10g25850
OsAffx.18402.1.S1_at--252--7451Chr10:13062815..13062839 (25 bp)
GTGTCAACTGAATTATCCCTAGTCA
LOC_Os10g25850
OsAffx.18402.1.S1_at--438--7091Chr10:13062817..13062841 (25 bp)
GTCAACTGAATTATCCCTAGTCAAT
LOC_Os10g25850
OsAffx.18402.1.S1_at--286--1971Chr10:13062821..13062845 (25 bp)
ACTGAATTATCCCTAGTCAATCTAG
LOC_Os10g25850
OsAffx.18402.1.S1_at--257--6091Chr10:13062872..13063021 (25 bp)
GAGTGCAACCAACCTATTAGAAAAG
LOC_Os10g25850
OsAffx.18402.1.S1_at--842--9814Chr10:13063592..13063615 (24 bp)
TAGAAAAGGTCAGAGACCCGGCTTT
LOC_Os10g25850
OsAffx.18402.1.S1_at--640--3393Chr10:13063601..13063625 (25 bp)
CAGAGACCCGGCTTTTTACTGAAAG
LOC_Os10g25850
OsAffx.18402.1.S1_at--467--10331Chr10:13063615..13063639 (25 bp)
TTTACTGAAAGCCATATCGGCAGTG
LOC_Os10g25850
OsAffx.18402.1.S1_at--789--1971Chr10:13063618..13063642 (25 bp)
ACTGAAAGCCATATCGGCAGTGTTC
LOC_Os10g25850
OsAffx.18402.1.S1_at--257--6692Chr10:13063650..13063674 (25 bp)
GTTGCCAGCGACAAAGAGGAGTTCA
LOC_Os10g25850
OsAffx.18402.1.S1_at--413--1492Chr10:13063695..13063719 (25 bp)
AGCAACCAGACTGGCGAACAAGTAG
LOC_Os10g25850
Target Sequence 
GAAAGTGTCAACTGAATTATCCCTAGTCAATCTAGAAGCTAAAAATTTGCATCCTAAACCTGAGTGCAACCAACCTATTA
GAAAAGGTCAGAGACCCGGCTTTTTACTGAAAGCCATATCGGCAGTGTTCAGCTGGGGTTGCCAGCGACAAAGAGGAGTT
CAACAAAATACAGACCAGGAACAGCAACCAGACTGGCGAACAAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis