Browse Element(s) Details


Os.22789.1.A1_at

Description gb:CA762859
DB_XREF= gi:25806898
DB_XREF=BR060008A20A06.ab1
CLONE=BR060008A20A06.ab1
TID=Os.22789.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22789 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565049.1 (A.thaliana) CCAAT-binding factor B subunit homolog, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2585011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed
LOC_Os10g25840NANA10+13059373..13060839retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22789.1.A1_at--67--1531Chr10:13070160..13070268 (25 bp)
AGCAGCAATTCGAAAGAGGATCCTT
LOC_Os10g25850
Os.22789.1.A1_at--1006--9231Chr10:13070264..13070288 (25 bp)
TCCTTGTTGAGGCTCGCCAAAAGCA
LOC_Os10g25850
Os.22789.1.A1_at--1098--2291Chr10:13070311..13070335 (25 bp)
AAAGGCGGACGGTTTATTAGCATAG
LOC_Os10g25850
Os.22789.1.A1_at--825--10211Chr10:13070325..13070349 (25 bp)
TATTAGCATAGAACATCCCCTTGAA
LOC_Os10g25850
Os.22789.1.A1_at--184--5491Chr10:13070335..13070359 (25 bp)
GAACATCCCCTTGAACTTTCTATGG
LOC_Os10g25850
Os.22789.1.A1_at--632--7351Chr10:13070431..13070540 (25 bp)
GTGAACGGTTTTACAGGAGATCTCT
LOC_Os10g25850
Os.22789.1.A1_at--589--8051Chr10:13070531..13070555 (25 bp)
GGAGATCTCTAATGCCATGGATAGC
LOC_Os10g25850
Os.22789.1.A1_at--483--7951Chr10:13070549..13070573 (25 bp)
GGATAGCAGCAAAGGTCAATCGCAA
LOC_Os10g25850
Os.22789.1.A1_at--432--5411Chr10:13070609..13070633 (25 bp)
GAAGCTGAACGTACATGTGCAACCC
LOC_Os10g25850
Os.22789.1.A1_at--75--7751Chr10:13070688..13070712 (25 bp)
GGTGTGCTTGTTGGCTTAGCTATTT
LOC_Os10g25850
Os.22789.1.A1_at--10--7711Chr10:13070716..13070740 (25 bp)
GGGTGCTTAGCAACTCATTTTAAAT
LOC_Os10g25850
Target Sequence 
AGCAGCAATTCGAAAGAGGATCCTTGTTGAGGCTCGCCAAAAGCAAGCAAAATTGAGGCGTAGAGGAAAAGGCGGACGGT
TTATTAGCATAGAACATCCCCTTGAACTTTCTATGGATGATCAGATATCGAAANACGGAGGAAGTGCCTCGCCTTNTTTA
TNTACAGTGTCAGAAAACTCTAGCAATGTGAACGGTTTTACAGGAGATCTCTAATGCCATGGATAGCAGCAAAGGTCAAT
CGCAANGGCTACAATNTGAAGAAAAAAAAATCTCTAGATGAAGCTGAACGTACATGTGCAACCCNCATTATTGCTCATGT
GGCAAATGGCAAANGATCCCTATNTTAACTATTTGGCCGGTGTGCTTGTTGGCTTAGCTATTTGAGGGGTGCTTAGCAAC
TCATTTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22789.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis