Browse Element(s) Details


OsAffx.30531.1.S1_x_at

Description gb:NM_196349.1
DB_XREF= gi:37534057
TID=OsAffx.30531.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0058B20.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2580011/11hypothetical protein
LOC_Os03g539302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25770Os.9729.4.S1_a_at11/1110+13021574..13025927Transcription initiation factor IIE beta subunit, putative, expressed
LOC_Os10g25780Os.7216.1.S1_at11/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25780OsAffx.5776.1.S1_x_at1/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed
LOC_Os10g25840NANA10+13059373..13060839retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30531.1.S1_x_at--573--1912Chr10:13044021..13044045 (25 bp)
ACGGTCGGCGGGTGCAAGCGGCGGG
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--83--9212Chr10:13044159..13044183 (25 bp)
TGCCACCGCTGGCAAGGAGAACAGC
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--6--8512Chr10:13044168..13044192 (25 bp)
TGGCAAGGAGAACAGCTCACCGCCG
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--627--4051Chr10:13044287..13044311 (25 bp)
CGATCCTGCTGCTCGTCATCGTCAG
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--810--9631Chr10:13044308..13044332 (25 bp)
TCAGGCTCCCCGCTGGTGTCATGCG
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--69--8373Chr10:13044332..13044356 (25 bp)
GGCGGGTCATGAAGCGGCGGCGCAA
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--33--6131Chr10:13044393..13044417 (25 bp)
GAGGGCCGCCCCAGACGAGTCGCTG
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--389--4392Chr10:13044428..13044452 (25 bp)
CCAAGGCGATGATCGCGGCCGCGTC
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--128--4712Chr10:13044442..13044466 (25 bp)
GCGGCCGCGTCAACGTTCGATATGA
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--112--7093Chr10:13044450..13044474 (25 bp)
GTCAACGTTCGATATGATGGACGAC
LOC_Os10g25800
OsAffx.30531.1.S1_x_at--326--252Chr10:13044461..13044485 (25 bp)
ATATGATGGACGACAAGGTGGCGTC
LOC_Os10g25800
Target Sequence 
ACGGTCGGCGGGTGCAAGCGGCGGGGGGAGGAGCGGCGCGCGGGCGGGCGCCGGCGGCGGGGGAAGCAGCGGCCCGGGCG
GTGCCGCTCCACTGCCTTCTCCATCCTCCTCGAGCTCGTCATCTCTCGCTCCTGCCCCTGCCACCGCTGGCAAGGAGAAC
AGCTCACCGCCGCCGGCGAGGTCGAGGACGAAGTGGACCGCTGCTGGCCGCCCTGCCCAGACAAGAGAGAGAGAGAAGAG
GAGGAGGAGGAGGAGGAAGGGAGCGGCGATCCTGCTGCTCGTCATCGTCAGGCTCCCCGCTGGTGTCATGCGGCGGGTCA
TGAAGCGGCGGCGCAAGAGCCGAGGCCGCCGCAGGGGGCGGTGGGGCTGCAGGAGGGCCGCCCCAGACGAGTCGCTGTCG
GGGAGCGCCAAGGCGATGATCGCGGCCGCGTCAACGTTCGATATGATGGACGACAAGGTGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30531.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis