Browse Element(s) Details


Os.7216.1.S1_at

Description gb:AK111949.1
DB_XREF= gi:37988612
TID=Os.7216.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cell elongation protein DIMINUTO (Cell elongation protein Dwarf1) (OSJNBb0058B20.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C04, full insert sequence.
FL= gb:AK111949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2578011/11Cell elongation protein DIMINUTO, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25734OsAffx.18400.1.S1_at11/1110+13002833..13003766hypothetical protein
LOC_Os10g25740NANA10+13007976..13008338hypothetical protein
LOC_Os10g25750Os.26886.6.S1_s_at8/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25750Os.26886.2.S1_s_at7/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.1.S1_x_at8/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.3.S1_x_at3/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25770Os.9729.4.S1_a_at11/1110+13021574..13025927Transcription initiation factor IIE beta subunit, putative, expressed
LOC_Os10g25780Os.7216.1.S1_at11/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25780OsAffx.5776.1.S1_x_at1/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0016021cellular_componentintegral to membrane
GO:0003824molecular_functioncatalytic activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7216.1.S1_at--1111--1211Chr10:13028753..13028777 (25 bp)
AGTTCAATGGCGCTCTAGCTGTCCA
LOC_Os10g25780
Os.7216.1.S1_at--302--8831Chr10:13028711..13028735 (25 bp)
TGATTGAGAACCACAGCTACCAGCC
LOC_Os10g25780
Os.7216.1.S1_at--228--1191Chr10:13028684..13028708 (25 bp)
AGTACGCTGTATCTGAGCTCAACGA
LOC_Os10g25780
Os.7216.1.S1_at--1026--7991Chr10:13028645..13028669 (25 bp)
GGATGTTTGATGCTTCTCACTACGA
LOC_Os10g25780
Os.7216.1.S1_at--670--3271Chr10:13028610..13028634 (25 bp)
CAAAAGTATGGTGCCGTCGGTACCT
LOC_Os10g25780
Os.7216.1.S1_at--288--7851Chr10:13028592..13028616 (25 bp)
GGTACCTTTATGAGCGTCTACTACA
LOC_Os10g25780
Os.7216.1.S1_at--626--8351Chr10:13028488..13028512 (25 bp)
GGCGTAATTTCGTTGAGACCTTTGA
LOC_Os10g25780
Os.7216.1.S1_at--26--10391Chr10:13028422..13028446 (25 bp)
TTTTCATCTGAACTATCCTTTTGCT
LOC_Os10g25780
Os.7216.1.S1_at--913--1491Chr10:13028373..13028397 (25 bp)
AGCACTTTGTAATCCTGTCATCGTC
LOC_Os10g25780
Os.7216.1.S1_at--740--2051Chr10:13028331..13028355 (25 bp)
ACTTCTTTCACCCTTGATCAAGTTG
LOC_Os10g25780
Os.7216.1.S1_at--407--8131Chr10:13028245..13028269 (25 bp)
GGACTAGTTAATTTCCTCAGCTATT
LOC_Os10g25780
Target Sequence 
AGTTCAATGGCGCTCTAGCTGTCCACAGGCTGGAGCAGTGGCTGATTGAGAACCACAGCTACCAGCCACAGTACGCTGTA
TCTGAGCTCAACGAGAAGGACTTCTGGAGGATGTTTGATGCTTCTCACTACGAGCATTGCCGCCAAAAGTATGGTGCCGT
CGGTACCTTTATGAGCGTCTACTACAAGTCCAAGAAGGGAAGGAAGACTGAGAAGGAGGTGCAGGAAGCCGAGGCCGCCA
TCCTCGAGCCAGCCTACGCTGATGAGGCGTAATTTCGTTGAGACCTTTGATGGTTTAGTCGTCCGGGTTTTCTCCCCATT
CCAAATGGGATTTTTCATCTGAACTATCCTTTTGCTTAGAACTTGATGTGCAGTGTTTGTAGCACTTTGTAATCCTGTCA
TCGTCGTCCGTCTGCTCTTGGTACTTCTTTCACCCTTGATCAAGTTGCTGAACTTAGTCAGGACTTANGTGGTATTTAAC
CCAAGATCTGAATAATTTTGTGGCTACTGGACTAGTTAATTTCCTCAGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis