Browse Element(s) Details


Os.9729.4.S1_a_at

Description gb:AK102029.1
DB_XREF= gi:32987238
TID=Os.9729.4
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C99736(E21196),AU030984(E60527), AU030985(E60527) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana BAC IG002N01; A. thaliana cDNA T20924. (AF007269) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080P17, full insert sequence.
FL= gb:AK102029.1 gb:AK061789.1 gb:AK064927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2577011/11Transcription initiation factor IIE beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein
LOC_Os10g25734OsAffx.18400.1.S1_at11/1110+13002833..13003766hypothetical protein
LOC_Os10g25740NANA10+13007976..13008338hypothetical protein
LOC_Os10g25750Os.26886.6.S1_s_at8/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25750Os.26886.2.S1_s_at7/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.1.S1_x_at8/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.3.S1_x_at3/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25770Os.9729.4.S1_a_at11/1110+13021574..13025927Transcription initiation factor IIE beta subunit, putative, expressed
LOC_Os10g25780Os.7216.1.S1_at11/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25780OsAffx.5776.1.S1_x_at1/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25789OsAffx.8157.1.S1_at11/1110+13038829..13040191NA
LOC_Os10g25800OsAffx.30531.1.S1_x_at11/1110+13043950..13044585hypothetical protein
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9729.4.S1_a_at--1047--7071Chr10:13023090..13023114 (25 bp)
GTCAAGGATGCGTACCCAACTGTAA
LOC_Os10g25770
Os.9729.4.S1_a_at--172--5691Chr10:13022133..13022157 (25 bp)
GACATTGTGTATCCTAACGACCCAA
LOC_Os10g25770
Os.9729.4.S1_a_at--925--5431Chr10:13021864..13021888 (25 bp)
GAACCTCAACACTTGATTGCTCTAC
LOC_Os10g25770
Os.9729.4.S1_a_at--364--71Chr10:13021849..13021873 (25 bp)
ATTGCTCTACGCTTATTCGACGTCA
LOC_Os10g25770
Os.9729.4.S1_a_at--614--231Chr10:13021817..13021841 (25 bp)
ATATTTATTTCTGTCCTCACTCTAC
LOC_Os10g25770
Os.9729.4.S1_a_at--278--9691Chr10:13021801..13021825 (25 bp)
TCACTCTACCTACTGCAATGCTTTA
LOC_Os10g25770
Os.9729.4.S1_a_at--1082--3011Chr10:13021785..13021809 (25 bp)
AATGCTTTATATACCTGCTACCCTT
LOC_Os10g25770
Os.9729.4.S1_a_at--89--1771Chr10:13021773..13021797 (25 bp)
ACCTGCTACCCTTATTGTGTATGTT
LOC_Os10g25770
Os.9729.4.S1_a_at--686--10171Chr10:13021749..13021773 (25 bp)
TATAAATGTAATTCCGGCCTCCGGG
LOC_Os10g25770
Os.9729.4.S1_a_at--1145--3911Chr10:13021735..13021759 (25 bp)
CGGCCTCCGGGAGCATAATCTGAGA
LOC_Os10g25770
Os.9729.4.S1_a_at--580--5991Chr10:13021714..13021738 (25 bp)
GAGACGGTCAGCTTTGTAAAACATA
LOC_Os10g25770
Target Sequence 
GTCAAGGATGCGTACCCAACTGTAATGGAAGATTTGCAGGCACTGAAGGCAGCAGGTGAAGTTTGGCTGTTATCGAACAT
GGATTCCCAGGAGGACATTGTGTATCCTAACGACCCAAAGGCAAAGATCAAGGTCGACGATGACCTGAAGCAGCTCTTCC
GGGAGATGGAGTTACCGCGGGACATGGTGGATATCGAGAAGGAGCTCCAGAAGAATGGCATCAAGCCCATGACCAACACA
GCTAAACGGCGGGCTGCAGCACAGATCAATGGGGTGCAGCCCAAGGCTAAGCCTAAGAAGAAGCAGCGTGAGATCACACG
CCGGACCAAGCTCACGAACGCCCATCTGCCTGAGCTGTTCCAGAACCTCAACACTTGATTGCTCTACGCTTATTCGACGT
CAAGTGGAGATATTTATTTCTGTCCTCACTCTACCTACTGCAATGCTTTATATACCTGCTACCCTTATTGTGTATGTTAT
AAATGTAATTCCGGCCTCCGGGAGCATAATCTGAGACGGTCAGCTTTGTAAAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9729.4.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis