Browse Element(s) Details


OsAffx.29207.1.S1_x_at

Description gb:NM_196341.1
DB_XREF= gi:37534041
TID=OsAffx.29207.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0011L09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g257306/11hypothetical protein
LOC_Os04g408903/11hypothetical protein
LOC_Os08g148701/11hypothetical protein
LOC_Os11g478001/11GTP1/OBG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25720NANA10+12987118..12990891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein
LOC_Os10g25734OsAffx.18400.1.S1_at11/1110+13002833..13003766hypothetical protein
LOC_Os10g25740NANA10+13007976..13008338hypothetical protein
LOC_Os10g25750Os.26886.6.S1_s_at8/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25750Os.26886.2.S1_s_at7/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.1.S1_x_at8/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.3.S1_x_at3/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25770Os.9729.4.S1_a_at11/1110+13021574..13025927Transcription initiation factor IIE beta subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29207.1.S1_x_at--120--57910Chr11:12630654..12630678 (25 bp)
GACGAGCTCCGGGACCACCTAAGGG
NONE
OsAffx.29207.1.S1_x_at--999--5836Chr11:12630666..12630690 (25 bp)
GACCACCTAAGGGATCAAAAGGGAT
NONE
OsAffx.29207.1.S1_x_at--671--7651Chr10:12998164..12998188 (25 bp)
GGGATAGTAATTTGCCCGTGCTACC
NONE
OsAffx.29207.1.S1_x_at--379--7051Chr10:12998158..12998182 (25 bp)
GTAATTTGCCCGTGCTACCGCTACG
NONE
OsAffx.29207.1.S1_x_at--728--9952Chr04:24053437..24053458 (22 bp)
TACGCCAAGATGTGGAGGCGGCATC
NONE
OsAffx.29207.1.S1_x_at--857--451Chr10:12996797..12996821 (25 bp)
ATCTCACCGCTTAAGCATCCAGCGG
LOC_Os10g25730
OsAffx.29207.1.S1_x_at--570--7653Chr11:28262930..28262954 (25 bp)
GGGATCGGATGCTACTACGCCACCG
LOC_Os11g47800
OsAffx.29207.1.S1_x_at--28--2012Chr04:24053528..24053552 (25 bp)
ACTACGCCACCGAGCCGGAGGGCAG
LOC_Os04g40890
OsAffx.29207.1.S1_x_at--233--8193Chr08:8957559..8957583 (25 bp)
GGAAGCCAAAGACGGCTCCTTTGCA
LOC_Os08g14870
OsAffx.29207.1.S1_x_at--176--6231Chr10:12996162..12996186 (25 bp)
GATGGCGGCAATGGCTGCATCAGTC
LOC_Os10g25730
OsAffx.29207.1.S1_x_at--150--2972Chr04:24054113..24054137 (25 bp)
AATGGCTGCATCAGTCTTCCTCGCT
NONE
Target Sequence 
GACGAGCTCCGGGACCACCTAAGGGATCAAAAGGGATAGTAATTTGCCCGTGCTACCGCTACGCCAAGATGTGGAGGCGG
CATCAGGCTCTCCTTCGCCGCATCTCACCGCTTAAGCATCCAGCGGGCTGGCCTGCTAGGGGGATCGGATGCTACTACGC
CACCGAGCCGGAGGGCAGGAAGCCAAAGACGGCTCCTTTGCAGTCNNNNGNNNNNNNNGANNGNNTNNNNNNNNNTGNCN
NNNNTNNNGATGGCGGCAATGGCTGCATCAGTCTTCCTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29207.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis