Browse Element(s) Details


Os.51366.1.S1_at

Description gb:AK062650.1
DB_XREF= gi:32972668
TID=Os.51366.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E06, full insert sequence.
FL= gb:AK099679.1 gb:AK062650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g256902/11hypothetical protein
LOC_Os08g424801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25720NANA10+12987118..12990891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51366.1.S1_at--599--5811Chr06:10484191..10484215 (25 bp)
GACCTCGGCCCCTAGAGTACAAGTC
NONE
Os.51366.1.S1_at--618--6071Chr06:10484177..10484201 (25 bp)
GAGTACAAGTCCCAAAAATCCTGTG
NONE
Os.51366.1.S1_at--432--7231Chr06:10484169..10484193 (25 bp)
GTCCCAAAAATCCTGTGTCTTTCCT
NONE
Os.51366.1.S1_at--1062--7431Chr06:10484155..10484179 (25 bp)
GTGTCTTTCCTTAATCTTTTCTGTA
NONE
Os.51366.1.S1_at--936--9731Chr06:10484144..10484168 (25 bp)
TAATCTTTTCTGTACGTGTGGGAAT
NONE
Os.51366.1.S1_at--372--8214Chr08:20788837..20788915 (24 bp)
GGAATTTTAATCTTCTTCCTTCTTG
NONE
Os.51366.1.S1_at--946--10673Chr06:10484109..10484133 (25 bp)
TTCCTTCTTGAGCATTGGCCTGTAG
NONE
Os.51366.1.S1_at--752--15Chr10:12974890..12974914 (25 bp)
ATTGGCCTGTAGCATTTGGTAGTTG
LOC_Os10g25690
Os.51366.1.S1_at--997--10752Chr06:10484081..10484105 (25 bp)
TTGGTAGTTGAAAACACGACCTGAA
NONE
Os.51366.1.S1_at--717--1812Chr06:10484066..10484090 (25 bp)
ACGACCTGAAAACAAGTGACCATGA
NONE
Os.51366.1.S1_at--167--6152Chr10:12975004..12975028 (25 bp)
GAGGTGATCTTCTTTTGTGAACTTT
LOC_Os10g25690
Target Sequence 
GACCTCGGCCCCTAGAGTACAAGTCCCAAAAATCCTGTGTCTTTCCTTAATCTTTTCTGTACGTGTGGGAATTTTAATCT
TCTTCCTTCTTGAGCATTGGCCTGTAGCATTTGGTAGTTGAAAACACGACCTGAAAACAAGTGACCATGATTTTCCTTTT
TTGTTGAAGTTAGTGAACAATCGGATAATTACATTGAGGTGATCTTCTTTTGTGAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis