Browse Element(s) Details


Os.25167.1.S1_a_at

Description gb:AK120220.1
DB_XREF= gi:37989843
TID=Os.25167.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.25167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041G09, full insert sequence.
FL= gb:AK120220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2567411/11Mps one binder kinase activator-like 1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25167.1.S1_a_at--587--10531Chr10:12959207..12959231 (25 bp)
TTCAGATCAAGAAACCCATCGAGGT
LOC_Os10g25674
Os.25167.1.S1_a_at--818--10291Chr10:12959183..12959207 (25 bp)
TTTCGGCACCGAAATATGTCGAGTA
LOC_Os10g25674
Os.25167.1.S1_a_at--369--8891Chr10:12959143..12959167 (25 bp)
TGAGGTCCAGCTTGACGATGAATCC
LOC_Os10g25674
Os.25167.1.S1_a_at--967--1391Chr10:12958949..12958973 (25 bp)
AGACGATATTCAAGCGCCTTTTCCG
LOC_Os10g25674
Os.25167.1.S1_a_at--514--4451Chr10:12958934..12958958 (25 bp)
GCCTTTTCCGTGTTTATGCTCATAT
LOC_Os10g25674
Os.25167.1.S1_a_at--170--931Chr10:12958874..12958898 (25 bp)
AGGAAGAAGCCCACCTTAACACCTG
LOC_Os10g25674
Os.25167.1.S1_a_at--976--3831Chr10:12958852..12958876 (25 bp)
CTGCTTCAAGCATTTCACATTGTTC
LOC_Os10g25674
Os.25167.1.S1_a_at--817--2071Chr10:12958530..12958860 (25 bp)
ACATTGTTCACCTGGGAGTTCAAAT
LOC_Os10g25674
Os.25167.1.S1_a_at--949--511Chr10:12958503..12958527 (25 bp)
ATCGATAAGGCTGAGCTTGCTCCAC
LOC_Os10g25674
Os.25167.1.S1_a_at--357--10651Chr10:12958487..12958511 (25 bp)
TTGCTCCACTTATCGACCTAATTGA
LOC_Os10g25674
Os.25167.1.S1_a_at--601--3171Chr10:12958468..12958492 (25 bp)
AATTGAGTCCATTGTTTCCGTTTGC
LOC_Os10g25674
Target Sequence 
TTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGAC
GATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCG
CCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACA
CCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCCACTTATCGACCTA
ATTGAGTCCATTGTTTCCGTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25167.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis